HsaINT0169716 @ hg19
Intron Retention
Gene
ENSG00000160183 | TMPRSS3
Description
transmembrane protease, serine 3 [Source:HGNC Symbol;Acc:11877]
Coordinates
chr21:43791996-43795977:-
Coord C1 exon
chr21:43795825-43795977
Coord A exon
chr21:43792889-43795824
Coord C2 exon
chr21:43791996-43792888
Length
2936 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
GCCTTTGTTTTCATTTATAGAGA
3' ss Score
9.92
Exon sequences
Seq C1 exon
GGGGACAGCGGGGGGCCCCTGGTGTGTCAAGAGAGGAGGCTGTGGAAGTTAGTGGGAGCGACCAGCTTTGGCATCGGCTGCGCAGAGGTGAACAAGCCTGGGGTGTACACCCGTGTCACCTCCTTCCTGGACTGGATCCACGAGCAGATGGAG
Seq A exon
GTGGGTGCGGCGCCCTCCCCAGCTCACGTTGTCCCTGGCTTTTGACCCTAAGGTCCCTTAAATGCAACCCTGGTCTTGCTATAAAAACCAGGGCGTGACCCAGTGGTTGTCAATTCAGCAGCAGTGACTTGGTGGCTCCAGGGTGTCAGACGCTTGTGCTGAAAACAGAGATCACAGCTAGTCCTGGGCAGCTCTGGGTGGGTGCAGCCTGGCAGGCAGAGGAGCTGGGGCCCGGGAGGAAGAAGGAGCCTCACGACATGGGAAAGGAGGAGGCAGCGAGGAGGAGCCCCTGCTGGGATGGGGATGGGTCGGGCGTGCCCCGTGTGCCAGGAGCAGGGAGAAAGTGGGAGGGGGCGGGGGGCTGAGACAGTGCGGGAGAGGACCTTGCCTGCCTGCTGAGGGGCTGGAACCTCGCTGGGAGCCAGGGATGAGAGGCAGCAGTCAGGAGAGGCTTGGGGAGCTCTGCATTGGTGGTGTGGGGGGGTGGGGGGTCCCGGAGGGGGAGGCGTGGAAGTGGGAGGGGCCTGCAGGGGGGCACCCAACAGCGAGGCTGGCTTGGCAGGACCCGGGCATGGAGGGGAAACCTGAGACGGTGGAGGAGGAAGAAGGAGGCTTAGGGCTTCGCTGGGACCCTGGCAGCTGCGTGCTGGCAGGTGAACACGGCGCCTTTCTCATGTGGGCGCCGGGGAAACATTTGCTGGCTTGATCTCAGATGAAGTCTCTCCTTGGGATGGTTTCAAACACAGGAGGTCCTCACTTAATACGGTTGATGGGATCTTAGAAACTGCAGCTTTAGGAGAAACAGTGCGCACAGGCCCTCCAGCAACGTCCTTGCTTGCAATGTAATTTTGTTATAAAGTCGATGAGAAAAAAAAAATTGGTTTCATTATATATCATTTTGCTTAAAGTCGTAGTTTCCAAGAACTAACAATGACGTCAAAGTAAGTACGTTTTTTTTCCCTAATTCAAGTGAAATTTATATAACATACAATTCACCATTTTAAAGTGAACAACCCTGTAGCATCAGCACATTCACAGGGCTGTGCAGACACCACCTTTGTCAGTTCCCAGCATTCTCATCTCCCAAAAGACACGCGGCACCCTAGAAGCACGCAGTTACTCCCCACTCCACTTTTCTCCCCAGCCTCTGGCACCCACCAGTCAGCTTTCTGTCTCCAAGGCTCAAAGACCTTTTTAAAAAGCTCATTTAATTTGAAACAATTGGCCAAGAAAGGACATCAAATGCTGAATGTGCCTCAGGCGTTAATTCCCGTTTTGCTCTCACTGATTTTGTGCTTTAAATGAGAAACTAAAGAATGGTGCCCACGGGCACAGGGTGAGGCCTGGGACTGAGACCTGGGCTAGCTTCACCTCCAGCACTGCCGCCCTGCAGCCCTGAGCACCCCCTCGGGGCGTGGTGAGGGCTGTGCTCGGGCTGGGTGGAAAGTGCTTGCTCCTGCTCACCTTGCTGGGAGAGGCAGCCTGGCCCCATACTAGGCACTGAGTGGCCTGCTATGCTCTTCAGTATAAAGCTCAGCCCAGCCCGCCCGCACTGTAGAAAGGACCAGGATGGACAACTGAATGGGAGACCTCCTCACTGTTCAGGGTGCTGTGGGAGCCTGGGGGGCACAGAAGGGTCGCGTGGGCACAGAGGGCAAAGGGCAGGAAAGGAGAAGCCGGTCCTCCACACGGGTCTGCAGTACATGGAGGCCTTCACGGGACACAGATCCCCAGGGGCTGAGCACTGAGCTGGTGATCCTAAAAGTCCCCCTTAAGACACTGAAGGCGCAAGGCAGAGAAGCCCACCGCCGTGTCTTCCAGCTGTCGTGGGTGAGCTGGAGACAAACGTTCAAAATCAGTCTGGGGAGCCCGCTCACAACGGTTCCATGACGGGGCCACCTCAGCCCCTCCCATGTCAGCACCGTCCTGGGCCACAGAGCCTGTGACCCTCCCTGTACTACAGCGGAGACGACCTGCATGAGGCCCCCCCAGCTAACAAGGGCAGAGTGTGCCTCACATCAGATCCCCGACGTGGCCCCAGTGTGACTGCACAGCAGAATCAACAGATCTCAAACTTAGGGGTGCAGAAGCCTCTCTCAGGATGTTTGTTAAATGTGAAGATTGCAGGGCGTTTATCTGGAGTCTGATTGGGAGGTCTGGGGTGAAGACCCTGGTGAATGTGTTGCATGGGGGCTTCAGGGCACACTGAGAAACCCTGGGAGGGTCTTGGAGGCAGTTTCCCCTGTTGTGGTGAAGCTGTGGTGGAGGAGCTCGTCTGTGACGCTGGCTCCGGCGATGCCTGGGGCCCCTGCTCCCTGCACAACGCCTTAGTCATCCGCTGCCTCCAACCCACCAGTGCATGCGAGAGATGCGCAGCCTCAGACACGCCCTTTCCCAAGTCCCTCTTCAGACGTCCTAGGGGAGACCCAGAAGAGACTTCCTTTCCTGGGAGGCTTTCCAGCAGGCCCGCTGTGCGTTTCAGTTGTCCATTGTGAGGAAAGTCAACGTGAGGGCCTTTGGAAGACTCACTGTCTTGCGGGGAAGTGTCCCGTGTGCTAGTTGGTGGCATGCCCATGGCCTCATCTTCATTTTCATCCAGCACTTTTCTCTATCTAGTTGGGGGTTTAAAACAAAATTGTTGTGACTCAAACCAGAACTCAGGAACATAGTGCCGAGACCTGGAAGTTTCCTACGGAAGTGACGGAACTGTCGCAGGGCGGAGATGGGACCTGCGGATGCATTGCTGGTTGGAGCTTTTCATGCCTGCCTGGGATCCACTCAGAGCTGGCAGCCCCAGGGGGAGGCCAACCTTGTCTTCATCGTGGAGAACAGCCCCACAATTCCCACAGGGCAAAATGCAGGTGCCCGCTCCGTCATCATGTTGGACGGATGGCTGGAAGTGCTAAAAACAATAACGCCTTTGTTTTCATTTATAG
Seq C2 exon
AGAGACCTAAAAACCTGAAGAGGAAGGGGACAAGTAGCCACCTGAGTTCCTGAGGTGATGAAGACAGCCCGATCCTCCCCTGGACTCCCGTGTAGGAACCTGCACACGAGCAGACACCCTTGGAGCTCTGAGTTCCGGCACCAGTAGCAGGCCCGAAAGAGGCACCCTTCCATCTGATTCCAGCACAACCTTCAAGCTGCTTTTTGTTTTTTGTTTTTTTGAGATGGAGTCTCGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCGAAATCCCTGCTCACTGCAGCCTCCGCTTCCCTGGTTCAAGCGATTCTCTTGCCTCAGCTTCCCCAGTAGCTGGGACCACAGGTGCCCGCCACCACACCCAACTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTGGCCAGGCTGCTCTCAAACCCCTGACCTCAAATGATGTGCCTGCTTCAGCCTCCCACAGTGCTGGGATTACAGGCATGGGCCACCACGCCTAGCCTCACGCTCCTTTCTGATCTTCACTAAGAACAAAAGAAGCAGCAACTTGCAAGGGCGGCCTTTCCCACTGGTCCATCTGGTTTTCTCTCCAGGGGTCTTGCAAAATTCCTGACGAGATAAGCAGTTATGTGACCTCACGTGCAAAGCCACCAACAGCCACTCAGAAAAGACGCACCAGCCCAGAAGTGCAGAACTGCAGTCACTGCACGTTTTCATCTCTAGGGACCAGAACCAAACCCACCCTTTCTACTTCCAAGACTTATTTTCACATGTGGGGAGGTTAATCTAGGAATGACTCGTTTAAGGCCTATTTTCATGATTTCTTTGTAGCATTTGGTGCTTGACGTATTATTGTCCTTTGATTCCAAATAATATGTTTCCTTCCCTCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160183-TMPRSS3:NM_024022:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.120
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(19.7=88.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)