MmuINT0162718 @ mm9
Intron Retention
Gene
ENSMUSG00000024034 | Tmprss3
Description
transmembrane protease, serine 3 [Source:MGI Symbol;Acc:MGI:2155445]
Coordinates
chr17:31316212-31320911:-
Coord C1 exon
chr17:31320759-31320911
Coord A exon
chr17:31317549-31320758
Coord C2 exon
chr17:31316212-31317548
Length
3210 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
GTCCCTGTTTTCACTTCTAGAGA
3' ss Score
10.06
Exon sequences
Seq C1 exon
GGAGACAGTGGAGGACCCCTGGTGTGCCAGGAGAGGAGACTGTGGAAGTTAGTGGGTGCAACAAGTTTTGGAATCGGCTGTGCTGAAGTGAACAAGCCTGGAGTCTATACGCGAATCACCTCCTTCCTGGACTGGATTCACGAACAGTTGGAG
Seq A exon
GTGGGTGGAGTGACCCAGTTGGAGGTGGGCGTTGACTCTCCAGCTCACGTGTTCCCTGCACCTGCCACAGGGAGCCAGGAGGAGATAGATGTGGGTATCAGCCCTAGAACACAGCTAATCCCCCGGGTGTGACCCAGGCATACAGGGGAAGGACTAGAGGAATGGCCCTGCCTGACTCAACAAGGAGAAAGGTGACCAGCAGATGAGCTGGGAAGTTGATCCCTTGCTGAGAGCCAGATCTGCTTTTCTTCAGGGAGGGGGAATCAGGACAGGCCTACAGAGGCTCCTGGTCAGAGAGGGGAAGAGAGGGGAACTGAGAGTCACAGGGCACCAAACAGAGAGATGCTCTGATAGACACAGAGGCCTTGCTGCAATGAAAGTCAGACGTCTACAACCCCCGTCTCTCCTGAGAGGGGAAGGGCTGTGGGGAAGCAAGGCCTGGCCACACACACATCAGGTGCTAGGCAAACATTTACTGACTTTATCTCAGACGGGTTTTACATCATCACCCAGTTCAGTTTCAAAGATGTTTTCTGCTGACACAGTATGAGTGAGATTTATGTAGCGTGGGCAAATGTTTAAAAGAGAACAATCCCATGGCATTTGACGCACTTACATGTGCAGCCATGCCCTCTGTGTGGTTCTAAAAATCCTCCTAGCATCCCAAAGGAAACACGTGTCCCTTCCTGCCCTCTAGTCTTCAGCGACTGGCTGTGAAGATCCAAAACATTTATAAGTTTTGTGTGTGTGTGTGTGTGTGTGTGGGTGGGTGTGTGGGTGTGTCTGTATGTATATATGTGGGAGCAATATGTCTGTATGTGTGTGTCTGCATGTACGTGGTGTGTGTGCATGTGTGTGTATGTGGTGTGTGTGTGCATGTGTGTGTTATGTGTGCATGTGTGTGTGTGTATGTGGGGTATGTGTGTATGTGTCTGTATGTATATATGTGGGAGCAATATGTCTGTATGTGTGTGTCTGTGTGTACGTGGTGTGTGTGCATGTCTGTGTGTATGTGGTGTGTGTGTGCATGTGTGTGTGTGTGTGCTCAGTGCAGGAGCTGGGGAATCAATCAAGTCCACTGCAGTATAGAGTGGTATGTGCTCTTAAGCACTGGGCCACCCCAAGGACCTTTTAAAAGGGTTCCTGTCATTTGGAGCAATTGACTAAATAAGAAAAGAAACCTTCAAGAACACCCTTAGCACCCCTCAGGGGTTAATTTCTGTTTCTTTGCTTTTTTAAAATGTTAGTTTTATCTTATGAGATGGCTGTTTTGTCGGCATCTGTGTCTGTACTCCATGTGTGTGCGAAATGCCTGGAAGGTCAGAAGCAGGCTTCAGATCTCTTGAGACTGGAGTCACAGACAGTTGTGAGTTGCAAATCAAACCCAGGTCCTCTACAAGAGCAGCCAGTGCTCTTAACCTCCCAGCTATCCTCCAACCTGCAGAGGGGGTGGCTGCACGCATCATTGTGTCTGGTGCCATGAGACTGTTGTCTTTTAGAAAGCTCATCTATATTTCATAAATTACTATTACTAAATATAGTAATTATACTACTTTTTAATTATTGGTTTAACTCAAGGTTTTGTTTTGTTTTTTTTCCTTTTTAAAATTTTTAGTTCTGAGGGCTGAATGCAAGGTCTTGTGTGTACTAGGTGGGACCCCACCACTGAGCTACACCCCAAGCTCTTTGCTTCTTCATCTAAATGAAGAAAGACACTGAACATGGCTCTCGTGTTGGGGTAGGATGGGGATGAGGTGGTAGCAGGTGAGGCCAAGACATGCTCAGATCTCAGCAACACTAGTCATAGCTGTGACTTTCCACAGCTTTGCTTCCATCTTTGATGCATGATGGAGCCTGTAGGGCTGGACCAGTGTAGGCCTGGCTGCCAGTCACAGGCCGGTAGGAAGCCACCAGTTGAAGCAGTCTGTTGGCACTATTATGCGTTTAGTACCACAGGCTCTTCTTCAGTAAAGGGTTTAGCTAACACTTGTCTTCCCCTTGTGAAAGGGGCATTCGAGCAGGTGATGCCCTTACACAGAGAGCACTGAAGGCACTGTGCAGACTGGCCATATGTCCCTGGAAGGTGTGGCAAGGGATAGAGGAACCTCAGAAAGCAAGTGTATCGTCCTGTGGTTATGTCTTGGGACACAGGTGCCACGTGACTGTTCTGGAACTCTAAACCACCACAAAGTCAAGAAACTATTTCCTGATGCTTCATACTGTCCAAGAATATGGGGCAGTCAGGGACTCAGGGTGGGCAGTCATGACAGGAACAGGGACCTAGCCAGGGTGCTCCCTACACTGTGCTCCATGACAGATGCTACCACACTCCTCACGAGAGATGGGATCTTGGATAAATGGGGGCTCCCAAGCTAGTAAGGACTCGTATGAGTACAGCCACACCCAGATCAGAACCTCAGCACGCCTCCACCCAGAGAGATAAACAGATGGAAAACTTTTAGTGAACAAATCCTTGACCATTTGCTAAAACTAAAGAGCCCCAGGACCTTCTTCCAGTCAGTCTCAATTAGGGATCTGGTGTAAGGACCAGGTGAACTTAACATTTTGAACATTCTTTTAGAACGGCTGGTGTATCAAGTCTCACTGGCAAGCAGGGAAAGACCCACCTGGTTTCTGAAGTGTCTTGTTGTCTGAGGGGCTTCACGATGGTGGCTGGCTGGGCTTTGGACAGTCTCTCTGGGCATCTTAGTCATCAGCTGCCTCTGACCACGGAGGACCTGCAGGAAATGTCACCTGCCAGACACATCTGCTTTTAAATCGCTTTCCAAGTAGCTCAAGGAAGGTCTGGAGGCCCCCTCCATTCTGTAGGAAGATTCCCAGGTTTGGCTTGTCCCCTGGGAGGTTCTTCCTCTCACTCCGTGGTACTGTTCTATGCCAGGCCCAGGGAGTCCCCACGCCACCATCCTCACCCTACTGAGCATGTTTCCCTATCCAGTTAGGGCTTAAAACAAAATGTTTCTGTCCTAACTTAATCCCCCGGAGCATGCAGCCGAGACGTAGCACCTTCACGTAGCAGTCTGTGGGACAGTCTTGGGTAGAGATGAAGAGTGCAAAGGGCTTCCTGGGTGGGAGCCATCCAGAGCTGGCAGACTTTTCCCTCCTCAGCAACCATTGATAACACCTGGTGGAAAAACCTGTCTGAGACATGGTTTGCAGGGGAAAAACAGCGGTCCCTGTTTTCACTTCTAG
Seq C2 exon
AGAGATCTGAAGACTTGAAGAAAAGGGAACCAGCCAGCCCCTGAGCTCCTGAGGGTGGTCACAGCCCGAGCCTTCCCTGGACTCCTGTGTGGCCATGTTGGATGCGAGTATCAGCTTTACTGCTCTGCCCATTGCACTGAAAGGGAGACAGCGGGAAGAGCATTCTCCTAACCCCGACACCTGGAGTGGCTTGCTGCTAAAGCCCCTGACCTCTGGACTTTGGGGCTGAAACGACCTTGGATGCTCTTTCTGTGCTTCATGAACCAACTCATGCACACAAGTGGCACCTTTCCCTGCCACCACCCTAGATTTTCTCCTCAGAGTGCCTGCCAACACAGGCAAGCTCTCATGCAAAGCCATCGAACACCAGTTGGGGCAGCTACGAAGCCAGGAACTGCTGATGTGAATTGGTGAAGATGCAGTCACCTGTTTGTTCCCAGATCTCAGATCTCCACCCAATCGTCTCCTTCCCAGAGCTGGTTCCGGGAGTGGGGAACTTGGTCTGTGACTGATTCACTGTTTTCTCACAGGATTTGGTGCTTGACGAATTCCTCCCTTCTGGAAGGTGTCCCTTTGTGTAGCTTGGCTTGTCCTCGGGCTTGAGTGAATGCGTGGTGGTGGGTGGTGGGCACAGAAATCATGGGCTCACGTCAGAAGCCCATCCTACACACGTCAAGAGTTTGCATTTTCCTGTTAGAATAGGTTTCCCAGATCTCAGAAGTATCCCATATTGCATTGTGGGATGCATAAGCAGAGTGAGGGACACAGGTCTGGGCAGAGACAAGACTGGGCACTAAAAGCAAGCTGAATCGAGGAGTCCTAAGTGATGGGTTCTGCCTTACCCCCCGCCCCGTGCACTCTGCTAATGGGTCATAGCTGATGGTGTCCGGGTCCCTCTTACATGGCTCACAGTCCTGTGGTTCCCATATTACCCAATAACAGAGGAGGGTTATGTGAGACATAGCTATGGGTCACTCAGGCTTGTCACAGACGAAGTCTTCAGAGTAGGAATCAGTTGTTTTGTGGCTGTAACAAAAAGTGTGTGTGTGTGCATGTGTGTGTGTGGGGGGAGACATATCACCAGGACAAACTACTTTTGTACACACATAGCCATTGTACTTTGACTCAACCCTATCCAGATTAGAGCCCCCACATAGCTTTCTGTGAATAGAATACAGGTCCCAAGGCCCACGGTGGGTACCTGAAACTGTGGGCAGCTCCGAGCCCTATATGGATGGTTCTTTTCCATATGCATCCCTCCCTACAGATGTGCTTCATCTACTAGTCACAGTAAGAGATGACTATCCTCACTGAAAATAAAGCACAGCAGTTATAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024034-Tmprss3:NM_080727:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(19.8=88.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: