BtaINT0150489 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015065 | TMPRSS7
Description
transmembrane protease, serine 7 [Source:HGNC Symbol;Acc:HGNC:30846]
Coordinates
chr1:57233685-57235426:+
Coord C1 exon
chr1:57233685-57233878
Coord A exon
chr1:57233879-57235387
Coord C2 exon
chr1:57235388-57235426
Length
1509 bp
Sequences
Splice sites
5' ss Seq
ATGGTGATT
5' ss Score
3.18
3' ss Seq
TGTGTACTTTTTCATTGCAGCTG
3' ss Score
10.03
Exon sequences
Seq C1 exon
CAGTAACAACAAAGGTGGCCTCCTTGTCCACTTTTGGCTTGTATTTGTCATGCCTCATGCCAAGGGCCACATCTTCTGTGAGGACTGTGTGGCTGCCATCTTGAAGGACTCCATCCAGACGAGCATCATAAACCGGACCTCTGTGGGGAGCCTGCAGGGTCTGGCTGTGGACATGGACTCTGTGGTATTAAATG
Seq A exon
GTGATTATTGGGTAATTCTCCTTCAAGCTCTCCTTCCAGCAGTACTCTTGATACTGTTTTATTGTAATCAATGTTGTCACGAAGTACAGTCTTCCCTCTGTATCCACGGACTCTGCATTCATGGATTCAACCAACCATGGGTTGAAAATATTCAGAAAAAAAAATCCAGAAAGTTCCAAAAAGCGAAACTTGAATTTGCCGCCGGCTGGCAAATTTACACAGCATTTATGTTGAATTAGCTACTATAAGTAATCTTGAGATGTTCTGAAGTATACTGGAGGATGTGCATGGATTTTAATGCAAATACTATTCCACTTTATACACTTTATACTTGAGTGTCCTTGGATTTTGGCATCCTTGGGGATGGGGATGCATAGTCTTGGATCCAGTTCCTCGTGGATACTGAGGAATGACTGTATTCTTTTCCACAATCTCAGTGGAACAGGATTAGCTAAAGACTCTGGAGCTACATTGATAAAGAAAGTTGCTAAATGTTGTATACAATGATTAGACAATAGAATTGGAGTCAAATATATTTATGAAATTAAATTTATTAAAGGATACCCTTCCCTATGGGGCTTCCCTCGTGGCCCAGTAGTAAAGAACTTGCCTGCCAATGCAGGAGACATGGCTTCAATCTCTGGGTCTGGAAGATCCCCTGGAGAAGGAAATGGCAACCTGCTCCAGTATTCTTGCCTGCAATATCCCAAGGACAGAGGAGCCTGGCAGGCTACAGTCCATGGAGTCGCAAAAGAGTCGGATAGGACTGAGTGACTAAACAACAAACCCTTCTCTATACTTAATTTGGCTTCAGGCATCTTCAAACCGAGGCTCCAAGGGACAAAGTCCTGAAGAAGGAAAGTTTTGCTGAGGTTTACTTTCCTTGTTTCTTCGTTCAGACAGAACTGTGTCTATGTTCTATAGTGTGTTCCAATGCTCCAAAATGGCCTGCTCCATAGCACAGTCAAAATGCAAACTCCATCACTTGTCTTAACAGAAAAGTGGTTTAATTATTGTTTAACCCCAAATTTATGCACCTTTCTATTTTGATTTAAATTAGATAGATAGATATGTGGGCATGTAGTAGGTAGATGAAAAGTATTTGGAATAAGTAATGAATGAATGGAAAATGTCTAGTGGAAAATTCTGTACCACATACACTATTTCAGATGCAAAAGCAGTTATTTTCATATTTTGTTGGGGTATTTTTTGTCATAAAAAGTGTTTAAAACTTGTTACTACAGATGATTTGAAGCATAAAAGTAAAGAGAATAGTTTAATGAACTCTTACACCCTTTATTCAGCTTCAACAACTATCAACTCATTACTGTTCTATTTGATCTCTAAATACCCACATGACCTCCTTTACCTTACAGGATTATTTTAAAGCAAATCTCAGATACACTGATTGCTTTTAAATGACTGAAAATATTTTTACTAAGCAAAATTCTGACAAATTGATTTCTGGGACTGACAGGTTTTTTTTTTCTGTGTACTTTTTCATTGCAG
Seq C2 exon
CTGGTCTTCGGTCAGATTACTCTTCAACCATAGGATCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015065:ENSBTAT00000020053:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0139015=SEA=PD(43.1=71.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTAACAACAAAGGTGGCCTCC
R:
GATCCTATGGTTGAAGAGTAATCTGA
Band lengths:
230-1739
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development