MmuINT0162780 @ mm9
Intron Retention
Gene
ENSMUSG00000033177 | Tmprss7
Description
transmembrane serine protease 7 [Source:MGI Symbol;Acc:MGI:2686594]
Coordinates
chr16:45681686-45683715:-
Coord C1 exon
chr16:45683522-45683715
Coord A exon
chr16:45681725-45683521
Coord C2 exon
chr16:45681686-45681724
Length
1797 bp
Sequences
Splice sites
5' ss Seq
ATGGTGATT
5' ss Score
3.18
3' ss Seq
TCTATACTCTTTCACTGCAGCTG
3' ss Score
8.89
Exon sequences
Seq C1 exon
CAGTAACAACAAAGGCGGTCTCCTGGTCCACTTTTGGATTGTGTTTGTTATGCCACATGCCAAGGGCCACATCTTCTGTGAGGAGTGTGTGGCGGCCATCTTGAAGGACTCCATTCAAACCAGTATCATAAACCGCACTTCTGTGGGGAGCTTGCAGGGTCTGGCTGTGGATATGGACTCTGTGGTATTAAATG
Seq A exon
GTGATTGTTGGGTAATTCTCCTTTAAGCATTCTTCAACATCACGTCTGATACTCACATTATCACTGTTAACATCGTAGTAGAGACTCTCACGATCCCAGGAGTAGAGGATTAGCTGGACTTTGGAGCTATTGCTGCTGAAGGGGCTTCTTTAATGCTATACCCAGTATGACTGAAAAGTAGAATTGTGCACAAATAGATGCAAAATTATATTTAGTAAAACGTGCCCTTTCATTCAGTTATTAAGCTGAGGCACGTTCAGAGTATGTCCCTAAGGAAGAAAATGCTAGAGTAGAAGAATTTTACTGAGGTTTAGCTTATTTTCCTTGCTGTCCTCTTATTGTTGGGGACAGAACGTTGAGTTTGGTCTCTGGACAAAGTGACAGGTATTAAAAGGCTTTCCTAGGCAAAGCAAAGGAGGAGAATAAGAGAAAGGTCACGTGAGTGTTCAATGATGGGGAGGGACTGCATAGCATGAAAAGACGAGGTGAGCACACAAGGGTGGGGGAGGCGAAGTGGCAGTCATGAGGGTTTTATTACAATTATATTTTTATTTGTGTGTGTGTGTACATACTATGGCACATGTGTGTAAGTCAACTTGTGGGAACTGATTCTCTCCTATTCTGTAAGGGTTAAGGTCAGGTCACCAGGATTGCCATCAAGAGCCTTCATCTGCTGAGCCACTTTGGTGGCTCCTGGGTCTTTGTATATTGAGCCTTTGGAGGTTAAGGTGGGGTCAAGGTGACACAGACTTTTGTGTGTGAAAACGAGCCCACACATGTGAGAATAAAATCCCATTTTTTAAAGTTTTTACACATTTGTGTTTAGTGTGGAATATACTGCCATAAAAGTGTGTTATACACCTCTCCAGGTGCAAGTGATGGGCCAGGTGCCTGCCTTTTGCCCTGAAAGGTCTAGTGTTGTTTCTGGAAGATCACGTTGCAGTAGCTTGTAGCAGGACACACATATGGCCTAAGAATTAAGATGTGTATTTGGACAGGGAGAAAATAGATAACCAAACATTATTATCTTTTTTGCCTCATTGAACTAAGGAGAAAAATATGTGAATGCACTGTATTTGCAGTTATTTATTTATTTATTTATTTATAACTTTGTGGTGAGTTAGAAGCTGGTCAGAGGTTTCCTACTATTGCACAAAGTCCACCATTTGAAATCTGCCTCCCCAGCCCTATTCTCTAATGCCTTGCCTACACCAGTGCTCCCAAACAGCCTGTACCGTAGCCCCATGGAAATATGCTGTCACCATTTGTCTTGCCAGTGCAACATTGTATTACTCAAATTATTCTGCAGCTATCTCTGTTGATATAAATTTTACATGTATAAGTACCAATTATGCACACAGAGATATACTAGATTTCACACATATACTAGATATACAGTAGGTGATGGTATTTGGTTTGAACAAATGAAAAAAAAATCTCAAATAGAAAATTTCACACTATATTTGCTATTTCAGTCATAGGACTAATTACTAATATTTATATAGTTGCTTTCTCACCCTTGAATTGTTTAAAATTTGTAACTATGAATTCAAGGAAGCAAATAAAATAGTATGCTGATTTCTCATAGATGCAATGGCTCTCATCTCCTGGCTGCCCTATTTTAGCTCTGAACCCCTAAATAACTCTACTCATCCCTGGACTCATCACATATCTGATATGTGAAGTACAACCCATATCAGATGTATCTGATGATCTTAAAGAAGAAATGAGAACAATTTTTGTAAAACAATGAACTTTTGGAACTAACAGTCTTTTTTCTATACTCTTTCACTGCAG
Seq C2 exon
CTGGGCTCCGGTCAGATTACTCTTCAGCTGTAGGATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033177-Tmprss7:NM_172455:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0139015=SEA=PD(43.1=71.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAACAACAAAGGCGGTCTCCT
R:
CAGATCCTACAGCTGAAGAGTAA
Band lengths:
231-2028
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: