DreINT0021360 @ danRer10
Intron Retention
Gene
ENSDARG00000086161 | TMPRSS7
Description
transmembrane protease, serine 7 [Source:HGNC Symbol;Acc:HGNC:30846]
Coordinates
chr24:21710658-21711123:-
Coord C1 exon
chr24:21710930-21711123
Coord A exon
chr24:21710694-21710929
Coord C2 exon
chr24:21710658-21710693
Length
236 bp
Sequences
Splice sites
5' ss Seq
ATGGTAACC
5' ss Score
5.31
3' ss Seq
CTGTTTTTCTTTTTTCCCAGTTG
3' ss Score
10.14
Exon sequences
Seq C1 exon
TAACAATAATCAAGGTGGTGTGCTGGTGCACTTCTGGATGGTGTTTTTGGTTCCACAATTGAAGACACCAGTGGTGTGTGAGGAGTGTGTCAGTGCCATCCTGAGGGACTCTGTGCTTATGAGTATGAAGAACAGGTCTACAGTGGGATTTCTACAGGGTCTTCCTGTCGACATTGACTCCATTCTCGTCAATG
Seq A exon
GTAACCTCTTTCACTGTTCAATGCTGTGTATAAAGTCAACTTGCACTTTTTTGAGAAATCTTAAAATTTGCCTTAAATTGAAAGTTTTCTCATCATTTACTCATCCTTCACTTGTTCCAAACCTGTTTGAGTTTCTTTCTTCTGTTGAACACAAACGATTTTGCTGAATATTTTGGGTGAATTATTCATTTAAAAATATATTTCCATGGTCAATTTCTGTTTTTCTTTTTTCCCAG
Seq C2 exon
TTGCTTTACGGTCAGATTATACATCAACAGCTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000086161:ENSDART00000129558:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0139015=SEA=PD(43.1=71.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAATAATCAAGGTGGTGTGCTG
R:
CCACAGCTGTTGATGTATAATCTGAC
Band lengths:
228-464
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]