HsaINT0169778 @ hg19
Intron Retention
Gene
ENSG00000176040 | TMPRSS7
Description
transmembrane protease, serine 7 [Source:HGNC Symbol;Acc:30846]
Coordinates
chr3:111764600-111766367:+
Coord C1 exon
chr3:111764600-111764790
Coord A exon
chr3:111764791-111766254
Coord C2 exon
chr3:111766255-111766367
Length
1464 bp
Sequences
Splice sites
5' ss Seq
ATGGTGATT
5' ss Score
3.18
3' ss Seq
TTTCCTGATTGCTCTTGCAGAAG
3' ss Score
9.55
Exon sequences
Seq C1 exon
CAACAACAAAGGCGGCCTCCTTGTCCACTTTTGGATTGTTTTTGTCATGCCACGTGCCAAAGGCCACATCTTCTGTGAAGACTGTGTTGCCGCCATCTTGAAGGACTCCATCCAGACAAGCATCATAAACCGGACCTCTGTGGGGAGCTTGCAGGGACTGGCTGTGGACATGGACTCTGTGGTACTAAATG
Seq A exon
GTGATTGTTGGGTAATTTTCCTTTAGCATTCCTTCCTGCAGGACTCCTGATACTTGCCATGATTATAGTCAACATTGTAATGAAGCATTACAATGTGGGATTACCCCACAATCCCAGTGGCGCAGGATTAACTAAAGACATTGGAGCTATGTTAGTAAAGGAAATTGCTAAATGTTGTATATTGCAATTGAACAATAGATGTGGGGACAATATACATACGAAATTGAATGTATTACTGTGTACCTCTACCTACCTTTATTCAGGTCATGCATCATCAAACTAAGTCCCCAAAGAACAAAACCCTAGACAAGGAAGAATTTTGCTGAGGTTTATCTTGTTACTTTACTTGCCCAGACAGAACTGTCCCTTTACTGTGTAATGTTGTCCAACACTCCAAAACAGCTTGCTTCATAGCCCCAAATGCAAATTTCATTGTTTGCCTTGATAGTAAAATGGTTTAATGATTGCATAACTCAAAATTTGTGCAGTTTTCTGTTTTGATTTAAATTTTATAGATAAAATACATATATGAACATGTTATAAGTATATTATAAATTTGTGTGTATTTAAAAATATATAAGTATATTATACACACACACATACACTAGGCATATGGTAGGTAGCTGACAAATATTTGTTAAATAAAGGAAAAATCTCATAGAAAATTCTGTATCTCATGTACTATTTCATATATAGGACTAATATCATATTTGTTTGGTTGCTTTTTTACCTTTGAAAATATTTGAAACTTGCAACTACAATTTCAAGGATACAAAAGTAAAGAGAATAGTATAGTGAACTCTCATACACCCTTTACTCAACCTCGACAACTACCAACTCACTCATGACTATTCTATTTGATCTCTAAATACCTGAACAACTACCTCATCCTCACTGGATTATTTTAAAGTAAATCCCAGATGTGTTTGATTGCCTTTAAAGAAGGACTGAAAATAATTTTTACTAAGCAAAATTCTAACAAAATGAAATGATAGGATTCAATCTCTTCTCATGTGCTTTTTCAATGCAGCTGGGCTTCGGTCGGATTACTCGTCAACCATAGGATCTGGTAAATTCTTTCATGTGGTTCCCCCTCCCCCCATGTTAATATTGTTTTTGGCTGTAATTTTCATTTTCTAATTGATGGTATTTGTTAGTGCTCTTTTAATTGCAAGTGACAGAAATGCATTCAAACTGCCTTAAGCACAAAAGAAACTTGACTGGCTCATGTAAGTGGGACATACATGGAGTGTGCTGGCGTTAGTTATGGTTGAGTCTAGGATCTAAAATAAAAATATCATCAGAACTCTGCATCTCTGCCTACTTCTATGGAGCCTTCTTTATCAAGTGTGCTCTTCCACTGTATTTGTAACAAGGACCACCAAGCAGATCCAAACTTATAATTTATCATTTTCTAAACCATGATGAAAACCACCTCCACGTATTTCCTGATTGCTCTTGCAG
Seq C2 exon
AAGTCCTGGGGCTGACTCTCATTGTCTGGATTGACTGACATGCCTATTCTTGAAATGACTTCTTTGACTCTGATTGGCCAGCCTGGGTTATGTGCCCACCTCTGAAACTAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176040-TMPRSS7:NR_026734:4
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0139015=SEA=PD(46.0=70.8),PF139231=zf-C3HC4_2=WD(100=44.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAACAAAGGCGGCCTCC
R:
CCCTAGTTTCAGAGGTGGGCA
Band lengths:
303-1767
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)