GgaINT0119250 @ galGal4
Intron Retention
Gene
ENSGALG00000015389 | TMPRSS7
Description
transmembrane protease, serine 7 [Source:HGNC Symbol;Acc:HGNC:30846]
Coordinates
chr1:87990165-87991303:+
Coord C1 exon
chr1:87990165-87990358
Coord A exon
chr1:87990359-87991264
Coord C2 exon
chr1:87991265-87991303
Length
906 bp
Sequences
Splice sites
5' ss Seq
GTGGTTAGT
5' ss Score
4.94
3' ss Seq
ATGACCTTTCTTCTGTGCAGCCG
3' ss Score
8.87
Exon sequences
Seq C1 exon
TAACAACAATAATGGAGGCCTTCTTATTCACTTCTGGATCGTATTTGTGGTACCACAGGCAAAAGGCCAAGCGCTGTGTGAGGACTGTGTGGCTGCCATTTTAAAGGATTCTATTCAGACAAGCATTGTTAATCGGACCTCGGTGGGAACTCTTCAGGACCTTGCAGTTGACATGGACTCCATCGTACTAAGTG
Seq A exon
GTTAGTATTAACACATGTCCCTGTCCTCGAAGGGACACTTTATTAATGAAGTTTTTACCCTTGGAGTTGCAGATTCTATAAACATACCAACATCTCTATCCTGTGCTTCTCATGGTGGGGAGAGGGGCTGGTGGTGTAGAAAAGAAAAGATTGGAAGTCAAATTAAGGTACAAAATGGCTTGGTCTCTGAAGCAATCCTTCCTGTACTTGGAGTATTTATGTTCTAAGCCTGACACCTTGCAGCCAGCTTAAATTTGGCTTAGGCTGTGACTTAGAAGGTATCAAAAGGTGATGGGTCCCTTTTTATGCAAGGATCAAACTTCAACCCACTCCACTGAAAAGGAGATTCTTTTCACACCTTTATTAGAGTTAAATAAATAAACAGTATACATATATAGTATAAAGCTGCCTATTCATTAAACAACTTCTATACGTTATGCCATTCCTGTTTAGGGAAGGAATTAGCAGGGAAGGATTCAAGACCCTGTTTAATGTAATTAGTTACAAAGTGGATTAAGATTTTTAGCTCTGTGAACAAAGGACAGATCAAGCTTTATGTGAATAAACGTCCTCAGCTGGAAGCTGAAAAATAATTTGAGACCAAGGGTGAGGAAATCACTTCCTAGGTACCTGTGCCTCAGGCCTTCAATTGATTTGGGTTGCTTAATTGAGATGCAGTCCTTTCATTCCTCAGGCACTGAGGTTCTGTCTGCAGACATGACTGATACTTCCAGAGCAGCTTGCAGGATTTGCAGAGATGGAGTGGGCTCGGGCAGTTTCCCTCACTGAGACAGCTGTTTCATTCTATGTGCTTAGTGCTGAGATTAGGAACGTGTGATAGAATCAAACCCTGAATTCTGGTTTTTGTGCAAATGAGAAGACTCACATGACCTTTCTTCTGTGCAG
Seq C2 exon
CCGGTCTTCGGTCAGATTACTGGTCAACAACGGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015389:ENSGALT00000024825:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0139015=SEA=PD(43.1=71.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACAATAATGGAGGCCTTCT
R:
CTGTTCCCGTTGTTGACCAGT
Band lengths:
231-1137
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]