BtaINT0151417 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003256 | TOMM34
Description
translocase of outer mitochondrial membrane 34 [Source:HGNC Symbol;Acc:HGNC:15746]
Coordinates
chr13:74082476-74083836:-
Coord C1 exon
chr13:74083737-74083836
Coord A exon
chr13:74082629-74083736
Coord C2 exon
chr13:74082476-74082628
Length
1108 bp
Sequences
Splice sites
5' ss Seq
TTCGTGAGC
5' ss Score
3.45
3' ss Seq
CATCCTGCCTCCTGTCCTAGAGC
3' ss Score
9.05
Exon sequences
Seq C1 exon
GTTCTTCAGATCCAGAAAAAGAAAGTGTTCTCTACTCCAACCGAGCAGCCTGCCACTTGAAGGACGGGAACTGCATCGACTGCATCAAGGACTGCACTTC
Seq A exon
GTGAGCGGGCAGGGCTGCCCCTGCGGTGCTGGGGGCTCGGGAGAGGAGACTGGGCTTCTCTGGCCCCACCAGTTACCTCTCATATTAGGGAGTGTCACTCAGGGTCAGCTGGTCACTGAAAATAGGAAGTTCTCCTTGGTCCTTGTGGCCTCTGACTTGGGTCCCTGGAGCCTCATCTCTGCTGCTGAAAGGAGTAGGGTGGTCAGTTAGAGGAAGGCCTTTAGTCTTTGTGAGACGTAGAACCTGGGCATGACCTAGAGTTGCAGACCAGTGACTGGCATGCTCAGGGTTTTTTTTTTTTTCTGGGATGGATGTGGGTGAGAGAAGGAGAGAGGGAAAGAAAGAGGGATGGTGGTTAATAGATAGCCTTGAAAGGAAAAAATGGTAACCATCACTGAGGTATAGGGCATGTTAAACCGTTTTTCATGCTTCTTGAAGCCAGTCTGAGATTGCCTTCATGGTCATCACTGAAGTAGCACTTGGATCTGATGTGTCCTCAGGAATCTGATATCCTGGGGTATTGCCTTAGCTTCGGGCCCTGGTGGTGGGTGGGAGAGGAGAGAGGTGAGCGTGCTCGTGGAGCCTCTGCTCGGTTGATTTGTACCAGGCCCTGTGCTGTTCTCCTTTGTGGAGCGCTCGTGAGTGCTCTGTGGGGTAAGTTTGCCACCCTGCCCAGGCTGGCACTGGATTGTGGAGGTCAAGTGATGTGCCTGGGGTCTCGTGGTTAGTGGCAGAGGTGGAATTCAGACACTGCTCCACCTGACTCCAAAGCCTGTTTGTTATCCCCACTCAGCCACACTCTGTAGAAAACAGAGAAGCATGAAAGCTATGAGGCACTTATTCTTGATTTCAGAGGGATCGCAACTATGAAAATCGATGCACACACAGACATATTTCCCGGTAGTAGTGTTTTTCCGTCCTCCTTCCCTTCTCCACTTCAGTCTGAGTTGAAAAGCCCCTCTTCTGAGACTTGACAGCCTTCACAGCATCTGTCGCCAGAAATGACCTCCCATGTACTGACGACCCAGACCGGAAGGAACTGTGGGAGGTTGGGAGCAGGGAGCCCCGGGGACTCAGCAGCCCAGTGACATCCTGCCTCCTGTCCTAG
Seq C2 exon
AGCACTGGCCCTGGTTCCCTTCAGCCTGAAGCCCCTGCTGCGGCGAGCATCGGCCTATGAGGCCCTGGAGAAGTACCCTCTGGCCTACGTGGACTACGTGACCGTGCTGCAGATTGATGACAGCGTGATGTCAGCCTTGGAAGGCAGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003256:ENSBTAT00000004220:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.162 A=NA C2=0.016
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(43.4=100)
A:
NA
C2:
PF134141=TPR_11=PD(7.9=11.5),PF0051523=TPR_1=WD(100=61.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGATCCAGAAAAAGAAAGTGTTCT
R:
CTGCTGCTGCCTTCCAAG
Band lengths:
248-1356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development