RnoINT0154396 @ rn6
Intron Retention
Gene
ENSRNOG00000029799 | Tomm34
Description
translocase of outer mitochondrial membrane 34 [Source:RGD Symbol;Acc:1309029]
Coordinates
chr3:160459405-160460820:-
Coord C1 exon
chr3:160460721-160460820
Coord A exon
chr3:160459558-160460720
Coord C2 exon
chr3:160459405-160459557
Length
1163 bp
Sequences
Splice sites
5' ss Seq
TTCGTAAGT
5' ss Score
9.77
3' ss Seq
TTTTTAACCTCCTGTTCTAGAGC
3' ss Score
9.22
Exon sequences
Seq C1 exon
GTTCTGCAGACCCAGAAGAAGAGAGTGTTCTGTACTCCAACCGTGCAGCGTGCTACTTGAAGGATGGGAATTGCACAGACTGCATCAAAGATTGCACTTC
Seq A exon
GTAAGTGGCCCAGGGAGCCTCTGGAATATCTGAGGGTTATCGAAGAGTAAGCCAGACTTCTCCTTAGGAGAATCCCACCTTTCTTTTTTCAGATAGTAGAATGGTATCATCAGGCCTCTTAGACTGACAGGCTCTACTGGGTCCTTGTCTTTGGAATTTGGGCTCTGAGAATGATGTCTGATGGGAAGTTAGAAGTAGACTGTAACACCTCTGTGACTCTTGGCACATGAGGTGAGACACAGTCAGAGTAACTGACTTGCCCGGGTGTTTTCCTGGGATGATGGTGTGAGAAGTAAGAATAGAGGAAAGAAAAAAGGGGATAATACATGTTAACAGGTTGTCTACATAAGCAAAGAGATGGTGAGGCACACCTTTAATCCCAGGGTTCAGTAGGCAGAGGCAGGCAGATCCTTGTCAGATCAAGACTGACCTGTTCTGTGTAGTGAGTTCCAGACCAGCCAGGGCTACATAGTGAGACCCAGCCTCAGAAAAAGAGGGTACAGGGCAAAGAGAAAGGAAGAAAATGACAGTCTGTCAGTAATCAGCTGAGTGGTTTTTCCTGTCTCGTTCTTCCTGGCTCTAGCTTTGTTCATCATGCTAAACTAGCATACATCTGCTGACTGGGTCCTTTTGGCTAACCTTCAATCTGATGCTGTCTTACATGCATGGGAGGAATAGGGAGAGAGGCATGCTCATGGAGCCTGTGCCACTTTCTTTTCTCTTTCACAGAGTATTCACTCTGGTGCTAAGTTTACCCTTCTTCCCGGGGCAGAACTGAGGTGACAGAGACTGGGATTATAAAATGTCTGCCTGGGGTCCCGTAACTAGTGGTAGTGTGGATAGAATGCAGACTCCACCCTAGGCTTGTTTCTTACTTCTGCTGGACCAGTGTGGAAACATGGACACATGAAAACTGTGAGGTCCCTGTTCTTCCTTTGGGCAGGGGCAGAGGGTCACCTTTCCTTAGTGCTTCTCTGCCTTCTCTCCTTTCCCAGCTCAGTCTTAAGTTGAGAAGTCCCTACCTATTCTAGAGATGGCATCTTTCTACCAGAGAGTAATTCAGACATGCTGGCATCTCCAGATGGCTGCCTGGATCACTGTACTAACGTTAGGGAAGCCTGTTGGCCTACAGACAGATGACATTTTTTAACCTCCTGTTCTAG
Seq C2 exon
AGCACTGGCCTTGGTTCCCTTCAGCATCAAGCCCTTGCTGCGAAGAGCATCTGCATATGAAGCTCTGGAGAAGTACTCCCTGGCCTATGTCGACTATAAGACTGTGCTGCAGATCGACAACAGTGTGGCATCAGCCCTGGAAGGCATCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029799:ENSRNOT00000040156:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(43.4=100)
A:
NA
C2:
PF134141=TPR_11=PD(7.9=11.5),PF0051523=TPR_1=WD(100=63.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGACCCAGAAGAAGAGAGT
R:
CTGTTGATGCCTTCCAGGG
Band lengths:
249-1412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]