HsaINT0170801 @ hg19
Intron Retention
Gene
ENSG00000025772 | TOMM34
Description
translocase of outer mitochondrial membrane 34 [Source:HGNC Symbol;Acc:15746]
Coordinates
chr20:43583709-43585126:-
Coord C1 exon
chr20:43585027-43585126
Coord A exon
chr20:43583862-43585026
Coord C2 exon
chr20:43583709-43583861
Length
1165 bp
Sequences
Splice sites
5' ss Seq
TTCGTAAGT
5' ss Score
9.77
3' ss Seq
ATTTTTGCCTCCTATTCTAGAGC
3' ss Score
9.48
Exon sequences
Seq C1 exon
GTTCTTCAGACCCAGAAGAAGAAAGTGTTCTCTACTCCAACCGAGCAGCATGTCACTTGAAGGATGGAAACTGCAGAGACTGCATCAAAGATTGCACTTC
Seq A exon
GTAAGTGGCCAAGGGTAATTTTGGGATGCCTGAGGGTCTCAGAAGAGGAGGCTGGGTTAATCTGGCTTGTTTCTTCTTTGGAAGGATCCCATCAATTACATCTGGGACAGATATTAAGAAAGTGTCACTGAGTTTCACCAGGTCACTGAGAATGGGAGTCTTTATTTGGTCCTTATGGCCCGTGACTTGCATCTTTGGAGTCTTGGCTCTGCTGCCGAAAAAGGAGTGGGATGGGCAGTTAGAAGCAGGCCGTAAAGTCTTTGTGCAATTTGAAACCTGGGAATAAGGTGGAGTGGCAGACCAGTAACTGGCTTGCCCAGGTGCTTTTCTGGGATGGGAGTATGTGAGGGGAAGGGAGCGAAGGAAAGAAGGAGGAATAGAGGTTAATAGATTGTCTCAGAAGGAGAAAGGAAAAAAATGGTATTCATGAATGACCAGTTTTAGAGGACACTGAACAATGTTTCATATCTCTTTTTCTTCAAGCCAGTCTAATATTCTTTTATCATCATTAAACTCTCACATTTACCTGAAATGTGTTCTCAGATCTGATGTCCTCTGACATTGCTTTAGATTCCTGCCCTGGTGATAGCCAGGAGAGCAGGAGGGGTGTGAGCATACTCACAGAGCCTGTGCTGAATTAATTTGTGCCATGCCTTGTGCCAGATTTCCCTCTTTGAGTGTTCACAACCAATCTGTGGGGTACGGTTACCATGTGTCCCAGGCCAGAACTTGGTTGCTGAGGGTTGGGGCAGTAAAGTGATTTACCTGGGTCACATAGTTAGCAGCAGAGGTGGAATTCAGACACCACCCCATCTGACTCCAAAGCTTGTTTGTTATTCCCACTAGACCACAACTGTAAAAAAACATAGTAGCATGAAAGCCATGAGGCTTTTGTTCTTGATTTTGGGGGAACTGAAACTATGAAAATTGATGCATGTGCACACACATTTAACAAAATTCATGTTTCTCTGCCTTCTTTCTCCTCCTCACTTCAGTCTACGTTGAAAAATCCCTGTTCTGAGGTTTGGCGTTTTTAGCCATGTCTCTCGGCCAGAAATTACTTCCTGTACGCTGAGTGCTCCAGATAACCCTGCCTGGAAGAAACTGTAGGGAAACCCTGGTGGCTCAGCAGCCAGCCAGTTGACATTTTTGCCTCCTATTCTAG
Seq C2 exon
AGCACTGGCCTTGGTTCCCTTCAGCATTAAGCCCCTGCTGCGGCGAGCATCTGCTTATGAGGCTCTGGAGAAGTACCCTATGGCCTATGTTGACTATAAGACTGTGCTGCAGATTGATGATAATGTGACGTCAGCCGTAGAAGGCATCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000025772-TOMM34:NM_006809:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(43.4=100)
A:
NA
C2:
PF134141=TPR_11=PD(7.9=11.5),PF0051523=TPR_1=WD(100=65.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGACCCAGAAGAAGAAAGTGT
R:
CGGCTGACGTCACATTATCATCA
Band lengths:
232-1397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)