MmuINT0163782 @ mm9
Intron Retention
Gene
ENSMUSG00000018322 | Tomm34
Description
translocase of outer mitochondrial membrane 34 [Source:MGI Symbol;Acc:MGI:1914395]
Coordinates
chr2:163890628-163892405:-
Coord C1 exon
chr2:163892306-163892405
Coord A exon
chr2:163890781-163892305
Coord C2 exon
chr2:163890628-163890780
Length
1525 bp
Sequences
Splice sites
5' ss Seq
TTCGTAAGT
5' ss Score
9.77
3' ss Seq
ATGTTTTTAACCTCCCGTAGCGC
3' ss Score
7.87
Exon sequences
Seq C1 exon
GTTCTGCAGACCCCGAAGAAGAAAGTGTTCTGTACTCCAACCGTGCAGCGTGCTACTTGAAGGATGGGAACTGCACAGATTGCATCAAAGATTGCACTTC
Seq A exon
GTAAGTGGCCCAGGGAGCCTCTGGAATACCTGAAGGTTACTGAAGAGCAAGCCAGGTTTCTCCTCGGGAGAATCCCGCCTTCTCTCTTTTTACAGATAGGCCACTTAGAATGACAGACTCCTTGTCTTTGGAATTTGGGCTCACTGCTTCTTTAATGGTGTATGATGGGAAGTTAGAAGTAGACTATAACATCTCTGTGACTTGGCACATGAGGTGAGACGCAGTCACAGTGACTGACATGCTCGGGTGGTTTCCTGGGATGATGGTGTGAGAAGTAAGAATAAAGGAAAGAAGAAAGGGGGATAATAGATGCTAACAGGTAGTCTAAGAAGCAAAGAGAGGGTGAGGCACATCTTTCTTTTTTTTTTTTTTTTTTTTTTTGGTTTTTTTGAGACAAGGTTTCTCTGTAGCTCTGGCTGTCCTGGAGCTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCTCAAGTGCTGGGATTAAAGGCTTGCACCACTACGCCTGGCTGAGGCATCTTTAATCCCAGTGTCCAGTAGGCAGAGGCAGGCAGATCCTTGTGAGATGAAGGCTAGTCTGTTCTGTATCATGAATTCTACACCAGCCAGGGCTACATAGTGAGGCCCTATCTCAAAAAAAGGGGATGGGGGCGAAGAGGAAGGAAGAAAGGACAGTCTGTCAGTAATCAGGTGTACAGAGCACTGAATGGTTTCTCCTGTCTCGTTCTTCCTGCTAGCCTTTTTTTTTCTTTTTTTTAAAGATTCATTTATCATTTTATATATAAGTACACTGTAGCTGTCTTCAGATACTCCAGAAAAGGGCATCAGGTCTCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTTGGATGAGCAGTCAGTGCTCTTAACTGCTGAGCCAGCCCCCCCACCCCCCGGGCTAGCCTTTTTTCATCTTGGCTAAGCTAGCATACATCTGTGGCTAACCCTATGTCTGATGTTGCTGTACATGCATGGAATGAGTAAGGAGAGAGGCATGCTCGTGGAGCCTGTGCTGCCTTCTTTTCTCTTTCACAGGGTGTTCACTGTGGTGGTAAGTTTACCCTTCTTCCCAGGACAGAACCCAGGTGACAACGACCGGGATGATGAAGTGCCTGCCTGGGGTCCCATGGCTAGTGGTAGCATGGATAGAATGCAGACTCAATCCTAGGCTTGTTTATTACTTCTGCTGGGCCACAGTGTGGACACATAGACACATGAAACTGAGGCCCTTGTTCATCATCTGGGCAAGAGGAGAGGGTAGAAAGATACACGTGCCTGCACATCTCATTAGTTCTCCTCTGCCTTCTTGCCTTTCCCAATTCAGTCTAAGTTGAGAATTCCCTACCTATTCTAGAGATGCTGTCTTTTTACCAGAAGTAATTCTGATATGCTGACTGCTCCAGGTGACTGACTGAATCACTGCATTGTTGGGGAAACCTGTTGGCCTAACATGTTTTTAACCTCCCGTAG
Seq C2 exon
CGCGCTGGCCTTGGTTCCCTTCAGCATCAAGCCCTTGCTGCGCAGAGCATCTGCATATGAAGCCCTGGAGAAGTACGCCCTGGCCTACGTTGACTATAAGACTGTGCTGCAGATCGATAACAGTGTGGCATCCGCCCTGGAAGGCATCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018322-Tomm34:NM_025996:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(43.4=100)
A:
NA
C2:
PF134141=TPR_11=PD(7.9=11.5),PF0051523=TPR_1=WD(100=63.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCTGCAGACCCCGAAGAAG
R:
CTGTTGATGCCTTCCAGGG
Band lengths:
253-1778
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: