DreINT0166348 @ danRer10
Intron Retention
Gene
ENSDARG00000001557 | tomm34
Description
translocase of outer mitochondrial membrane 34 [Source:ZFIN;Acc:ZDB-GENE-030131-2081]
Coordinates
chr6:52231873-52232205:-
Coord C1 exon
chr6:52232106-52232205
Coord A exon
chr6:52232026-52232105
Coord C2 exon
chr6:52231873-52232025
Length
80 bp
Sequences
Splice sites
5' ss Seq
GGCGTGAGT
5' ss Score
7
3' ss Seq
ACTTTATATTTACCTTTCAGGTC
3' ss Score
11.14
Exon sequences
Seq C1 exon
GTCAGAAGAAAACTGAAGATCTGGGTATTTTGTACTCAAACAGGGCCGCCAGTTACCTGAAAGATGGAAACTGCAATGAATGCATTAAAGACTGCACGGC
Seq A exon
GTGAGTGCAATGAATGAAGGTGCCAACAAGTTTAACATGATGATGCTCAGTGTTAAAAAAACTTTATATTTACCTTTCAG
Seq C2 exon
GTCGCTTGACTTGGTTCCATTTGGATTTAAAGCTCTGCTACGCCGTGCAGCAGCTTTTGAAGCTTTGGAGAGATACCGACAAGCATATGTGGACTACAAAACAGTTTTACAGATCGACTGGAACATACCAGCTGCTCACGATGGAGTCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001557:ENSDART00000001803:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.019
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(44.0=100)
A:
NA
C2:
PF134141=TPR_11=PD(8.0=11.5),PF0051523=TPR_1=WD(100=59.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCATTAAAGACTGCACGGC
R:
GTTGACTCCATCGTGAGCAGC
Band lengths:
172-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]