BtaINT0151650 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014006 | TOR3A
Description
Bos taurus torsin family 3, member A (TOR3A), mRNA. [Source:RefSeq mRNA;Acc:NM_001080376]
Coordinates
chr16:61884675-61886167:+
Coord C1 exon
chr16:61884675-61884799
Coord A exon
chr16:61884800-61885329
Coord C2 exon
chr16:61885330-61886167
Length
530 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
AACCCTGCTCTTGATTTCAGACA
3' ss Score
7.14
Exon sequences
Seq C1 exon
TAACCTTGGGGGCAATATCATCAATGAGGTGGTCCTGAACCTGCTTAAGGCTGGGCAGTCCCGGGAAGAAGTCAGGATGGAACACCTGGAGTCCCGCCTCCAAGCTGAGATTGTGGCATCCACAG
Seq A exon
GTAAGTGATGGCCAGCCTTGCAGAACATAAGCCTCTGGTGAGAGGGGAGGTAGAGAAAAACGTGTATGTGCTGGAAGTTGTGCTCATGAGATCAGACAGGGTACTCAGGACCACAGAGGCGGTACCATATAATATTCTTGTCGTCAGCTTGACGTAGGCATGAGAAAAGTCCTTTTCTGAAAACTATTCCTTAAAAAGAGAACAGTTGGCCTTGGCCATACAGACCCTTGAAGAAGAAAGTCACTGTGTGAGTCCCAGTGGCTCAGCCTCCAGTCGTAGGCAGGGCCGCTGCACCTCTGCCTCTGCCATCAGATGAAACCATAGCCTGGCAGGCACGTGCACTGTCTCTCCCTCTCACACGTCTAGCTCCTCTAGGCCCTCTCTCCCTAAAGGGAGACACATAGTTGCATAGTTCTTGACACAGACTTAAGACAGGCTTCTCGGAGTTGGCCTTAGGGTGGGGGAACACCTCGACTCCAGCTGGGCTCAGCCCCAGCTCAGACCCCATGTAACCCTGCTCTTGATTTCAG
Seq C2 exon
ACAGTGGCTTTGGGCACAGCCGTCTTGTGAAGGAAAACCTGATTGACCTCTTCATCCCCTTCCTGCCACTGGAGTTCCGTCACGTGAGGCTGTGCGCACGCGACGCCTTCCTGAGCCAGGACCTCCTGTATACAGAAGAGGCCCTCGACGAGATGGCTAGGATGATGGTGTACGTCCCCAAGGAGGAACAGCTCTTCTCTTCTCAGGGATGCAAATCTATCTCCCAGAGAATTAGCTATGTCCTGCCTGAGGGCTAGATGAAAACTGCCCGAAGCTGCCTTCCTTCCTCTAATGGACCCTGGGCTGTCGTGGCAGCACACTGTCCGGGACATAACAGGTTGGAAGGGCAGGCTAGCAACCAGCAGTCAGGAGCACACAAGCAGTGTGTAGAGGGGAGGCCTTAGATCAGAGACAGAGCCAGTGCTTCAGATCACTTGGTGCCTTAAAGAGCCACGTTCTGAAATGTGAGCCAGCTGGTTGGGAGAGGTGATGTGGGAGAGACATCCCAAGGATTTATTAGCATCTGCCCGGCCTTGGTGTTGGGCCTGAGGCTGTAGTATGCTCGGTGACAGAAAGGGAAAGACTAACTTCTGCTTACCAGTGGCAGGGGCTGACCTCACGTTTGCAGGCTGGGTGGGTGAGCTTTCAAGTTGTTTCCCAGAGGGAGGCTGAGCAGCTTCTATCTGTGAGCTCAGGCCACAGCTTCAGGCTAAAGGGCACAGGGGAAGTTTGGTTTTTTTAATCAGTATAGGTGAAGATTTCTTCTGCTCTGCAGATTTTTAAGATTTAAATTAGTGACCTTAACATATGTAAAGATTAAAATTTTGTATTTTTTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014006:ENSBTAT00000018609:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCGGGAAGAAGTCAGGATG
R:
AGCTTCGGGCAGTTTTCATCT
Band lengths:
343-873
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development