RnoINT0154652 @ rn6
Intron Retention
Gene
ENSRNOG00000004307 | Tor3a
Description
torsin family 3, member A [Source:RGD Symbol;Acc:1310101]
Coordinates
chr13:74252405-74253889:-
Coord C1 exon
chr13:74253765-74253889
Coord A exon
chr13:74253274-74253764
Coord C2 exon
chr13:74252405-74253273
Length
491 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
ACTTTGGGTCTTGATTTCAGACA
3' ss Score
6.32
Exon sequences
Seq C1 exon
TAACCTTGGGGGCAGTGTCATCAATGAGGTGGTCCTAGGTTTGCTCAAGGCTGGATGGTCCAGGGAGGAAATTACGTTGCAGCACTTGGAGATGCCCCTTCAGGCTGAGATCATAAAGTCTGCAG
Seq A exon
GTCAGTGATCAATTCAGATTCATACAGTCTTGCCAAGAGCACAACTGTTGACGATTGGTATCAAATGTGGGACAGTGAGGGCGTCTGGACAGTCTCACATTGTCAGCTTCTGGTGGCACAAGTACAGTAAGTTAAGCCTACACTCCTTTCCTGGAAATGCCTTCTGGAGAGGTCACTGGCCCAGACACAGCTGTGGTCTCTGCCCGTAGGCTAGCAGATCTTCCTGAGAGAACAGTGCAGGTGGGGCAGCTCCTTTTTGCTACACCAAAGCAAGCCACAGTCATGGTGCTCCTGCCCTGTCACCTCCTGCCACAGCCACAATCACTGTGCTCAGAGTAGCCACAGTTGCACAGCCCTTGGCAACTACATACAGCACTCCAAGGGCTTTGTAGACCAGGTCTTGCCCAGGTCTCAATTTGGGGGGCACCTCAAGTCTCTAGCAGGGTTCAGTCCCAAGGCAGGCTCCATGTAACTTTGGGTCTTGATTTCAG
Seq C2 exon
ACAGCAGCTTTGGCTCCAGCCGTCTCCTGAAGAAACACCTTATTGATCTCTTTATCCCCTTCCTGCCACTGGAGTACCGCCATGTGAGGCTGTGTGTCCGAGATGCCTTCCTGGGCCAGGATCTCCCATACACAGAAGAGGCCCTGGATGAAATTGCCAAGATGATGACATACGTCCCTGAGGAAGAGCAGCTTTTCTCCTCTCAGGGTTGCAAATCCATTTCCCAGAGAATCAACCTTGTCTTGCCTTGAGAGTGGCTCCTTTGCTCCCGGAACAGTCTTTTTCCATCAGCCAGATGCCCTAGTGTCCAGCAACCACTGCTTCCAGCTAGTGTGCAGAAGGGCAGCTCCTAAAAACCACTTGGTGCCTTAAAAACCCACACTCTAGACTGAGGTCAGGAAGCCAGTGGAAGGCCCAAGCACCAAAGGGTCCTCAGAACACTCCCTACAGTCTCTTGGCACCATAGCTCTTCCTGGAAAGCCGCTGGAATGGAGTATGAGCCTGAGGCCCCAGAATCCTTGGGCTACAGAACAAGGAAGATGAAAGATGTGTGGACCAGCAGGAGTGTGGCTCTGGTCTGCAGGTTTGGCTGGCTCTCCGGGGTAGGGAGATGGGCAGCTTCTGCATGTGAGCAGACCAGCAAAGGGCCTTAGTCTAAAGAGAAAACCTTTCAAAACATGATGGGTGTGGCACACACCTGTGACCCTAGCACTTGGCAGGCTAATACAGGAGAGAGCTGAAGAAACCTGAGCTGCCAGGCAGGCTTGACAAACAAAACCCCATAGGTGTGTAGCTAAGGCATGTTCTGTTCTGCAGACTGAAAACTTTGAGGCCTTGTCATGTGTGATTAAATGTATTTTTCTAACATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004307:ENSRNOT00000005726:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTAGGTTTGCTCAAGGCTGG
R:
GCAAAGGAGCCACTCTCAAGG
Band lengths:
358-849
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]