MmuINT0164024 @ mm10
Intron Retention
Gene
ENSMUSG00000060519 | Tor3a
Description
torsin family 3, member A [Source:MGI Symbol;Acc:MGI:1353652]
Coordinates
chr1:156653617-156656596:-
Coord C1 exon
chr1:156656472-156656596
Coord A exon
chr1:156655944-156656471
Coord C2 exon
chr1:156653617-156655943
Length
528 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
ACTCTGGGTCTTGGTTACAGACA
3' ss Score
5.86
Exon sequences
Seq C1 exon
CAACCTCGGAGGCAGTGTCATCAATGAGGTAGTCCTGAGTTTGCTTAAGGCTGGATGGTCCAGGGAGGAAATTACGACGCAGCACTTGGAGGTGCCCCTTCAGGCTGAGATCATGGAGGCTGCAG
Seq A exon
GTAAGTGGTCAACTCAGATACATACAGCCTTGCCAAGAGCACAGCCAGAGATGATTGGTATCAAATGTGAGGCAGTGAGGGTGTCTGGACAGTAGAGGACATAGGACAGCCTCACCCATCAACTTCTGGTGGCACGAGAGTATGCCTATACTCCTTCCCTGGAAATGCATTCTGAAGAGGGTCACAGGTCCAGCCCCGCCCTAGAAACAGCTGTGGTCTCTGACCATAGGCTAGCAGATCTCCCTGAGACAACAGTGCAGGTGAAGGTGGGGCAGCTCCACCTTTTTGCTACACCAAAGCCAGCCACAGTCCTGGTGGTCATGCCATTATCTGCTACTACAGCCACAATCACTGTGCTTCTCCATGCCTAGAATAGCCACCACCGCACTGTCCTTGGCAACAATGCACACAGTACTCCAAGAGCTTTGTGGGAGACCAGCTCTTGTGCAGGTTTCAATTTGGGGATCTCCAGCAGGGTTCAGTCCCAGGCTAGGTCAGACACTATGTAACTCTGGGTCTTGGTTACAG
Seq C2 exon
ACAGCAGCTTTGGCTCCAGCGGTCTCCTGAAGAAACACCTTATTGACCACTTTATCCCCTTCCTGCCACTGGAGTACTGCCATGTGAGGCTGTGCGTCCGAGATGCCTTCCTGGGCCAGGATCTCCCATACACAGAAGAGACCCTGGATGAAATCGCCAAGATGATGACATATGTCCCTGAGGAAGAGCGGCTTTTCTCCTCTCAGGGCTGCAAATCCATTTCCCAGAGAATCAACCTCTTCCTGCCTTGAAAGTGACTCCTGTGCACCCTAAACAATCCTCCTCCACAAGAGACAGCCATCTGCCAGGTGCCCTGGCGTCCAGCAATCACTGCTTTCAGCTGGTGTGCAAGAGGCAGTTCCTAACAGAGGCAGTTTCTAAAAACCACTTGGTGCCTTAAAAACCTACATTCTAGACAATCTAGACTGAGGGTCAGGAAGCCAGTGGAACGGAAGGTCCAAGTACCAAAGGATCCTCAGAACACTCCCTACAGTCTCCTGGCACCGTAGCTCTTCCTGGAAGGCAGCTGGAGTTCATATGAGCCTGAGGCTCTAGGATCTTTGGGCTACAGAACAAGGAATATGTGTGGACTAGAGGCGTGTGGTCCAGGTCTGCAGGTCTGGCTGGCTTTCCTTGCTTTCCGGCAACGTGGGGGAGAGGGGCAGCTTCTGCATGTGAGACCAGCAAAGGGCCTTAGGCTAAAGGACAAACTGAAGCTTTCAAAACAGGATGGGTGTGGCCCAGCACTGTAGTAGGCTAATATGGGAGAGAGAGCTAAAGAAACCTGAGCTGCCTCGTTTGAGCAGCCTGCCAGGCTTGACCAAAACTCATGTGTATGGATAGCTAAGGCATGTTCTGTTGTGCAGACTGAAAACTTTTTAAAGAGGCCTCGTCATGTGTAATTAAATCTTGTATTTTTCTAACATCCTTTCTTACTGAGACCTGGTCCTTGCACTGCCCTGGCAGGCTGGCACAGCACGTGCTGGTCTCAGGCTACTTTAGAGCTTCTTACTAAACTCCTCTGACTCAGCCCTCGAACACACGTGTTCTCCGCTCCAGCTCGGACAAGTGGTTCCTGAGGCTGATGTGGCGAGGCAGGTCAGTACCACCTGTCTTTAGAATACCATGGGCCATTCTTTTCTGGTCCCTTCACACTTTTTAAACATACAGGTCTTTGTGTTTTCTCAGAATTTCCCCCTCTTATTCAAAGTCCTGCTCAGCACTCTCACCTTTAGTTCTTGTAAAAATGGACCATTTCTGCAACCCCCACTTACCAGTACATGTGTACTCACTCACCTGCCTTAAGGCTAGGGACCACCTAGCCCAGCCATATTCAAATAACTGAAATAAAGGAGTGTGGTTTGGAAGTGGGATCTCAATTAGCAAAGGCAGTCACAAAGTTCAAAAGCTTAGGAGTTCTGCTGCCACAAACCCCAGGGACAGAAATTTAACAATTAAGGTTTCTTATAAAGCAAGACCACATGGTAATTAATAAGCATAAAATGCCCAATGAGACTTAGATTCTTGTTCAAGCCAGGTGCTTCCATGCTGTCCTTGAATATTCAGGAGGACAGAGCGGGATGGGCACAAAGTGAGAACCAAGTGAACTGTAACAGGAATACTAGTGAATCCCTCCCATCCAAGAGCCAGACACACCGTTCTCCCTCTCGACAGGGGATGCTGGAGCGCTGAGCAGGTCTTACCTGATCTAACAGAACTGAAATCCGAGAATACCCTGTGGTCACGAGTATTATAGGTAGGAAAGCAGAGCAGGGATTATAAGCAGAAACTTACAGTTCCAGAACAACCAGCAGGTCAGTGGTTAGAGTGAAATGGAAAAATCTTAATTTTGTGAGGCAAAGCCCATGAGGAAAACAGCTCTGAGAAACTGCAACACACACACACATCTCAGACAGGCACTGTGCCCAAAGGACTAGAAAAACACTAAACTCCAAATTAGTATAATAACGAGCACTACAGTGGTGAAAAAGCTCCATGACTCAAGCACTCCGAAGACTGAGGCAGGAGGCTGTCTAGTGAATTTGAGACTGGCTAGGGATATACAGCAAGACTGTCCCTGTCTTTTTGAGACAGTGTCTCACACAGCTAAAAATGGTCTTGAACTCAGTACGTAACCCTGAAGTGACTTTGCTTTTTCATCTTTCAAGTGCTATAATTACAGGCATGTGCCAGTACACCTGGCTTTATCTGGTGCTGGGCTCAGATCCTGGGCTTCTTGCTAGGCAAGGACTTTACTGATGCCCAGCCCCAAGACCCTGTTTCTAAGAATGACACTGGACTGGACAATAAAAACAAGGTCAGTGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060519:ENSMUST00000079625:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTACGACGCAGCACTTGGAG
R:
ATGGCTGTCTCTTGTGGAGGA
Band lengths:
356-884
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types