GgaINT0037395 @ galGal3
Intron Retention
Gene
ENSGALG00000004216 | TOR3A
Description
NA
Coordinates
chr8:6547295-6548077:-
Coord C1 exon
chr8:6547953-6548077
Coord A exon
chr8:6547705-6547952
Coord C2 exon
chr8:6547295-6547704
Length
248 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
TGTCTTGCTTTTTGCTGCAGAGA
3' ss Score
9.26
Exon sequences
Seq C1 exon
CAATATTGGTGGCAGTGCCATCAACGAGGTTGCCCTGGACTTCTGGCGAGCTGGACGGGCACGGGAGGAGATCCCCATGGAGCTCCTGGAGCAGCAGCTGCGGCTGGAGATGCTGCAGCTTGCAG
Seq A exon
GTAGGAGCTGAGTGCTGCAGCAGACGGCCTGCCCAGTCACAATCCTGCACCTGAGCACCAGGGTGGGGCTTTCTTATGAGGAGCTTTGTGCTGCAGGAGCATCTGGAGAAGTGCTGTGTACCTTTTCTTTCTTCCACGTAGCTCAGCCTAGTGAGCATGGCCGCAAGGCACATGGGAAGAGGAGCTGAGTTGTTGAGGTGCCAGCTCTCAGGTGGCTGAAGCTTGCTTTGTCTTGCTTTTTGCTGCAG
Seq C2 exon
AGAATGGTTATGCCCACAGCCGCCTCCTTGAAGAGAACCTTGTTGATTTCTTTGTGCCATTCCTGCCTCTGGAGTACCACCACGTGAAGCTCTGCGCACGGGACGCGTTCCTGGCCCGTGGACTTCCCTACACAGAGGCAGCCCTTGATGAGGTTGCCAGGATGATGGTGTTTGTCCCCAAAGAGGAAAAGCTTTTCTCTGCACAGGGCTGTAAATCTGTATCACAGCGCATCAATTACTTCATTCCTTGAACACCAGGTGGGACTACATCCCTGGTGAAGGTGATTCCATACACCAGGAGCTGCTCTCCTTGCACAAGGTCAGGCAAGCAGATCACCCCCTACACAGGGGCAGAGACTGAACTCCAGTGAGGGCTGCTCATAGGGAAGGCAGTGTGCCCTGCCCAACTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004216:ENSGALT00000006703:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGATGCTGCAGCTTGC
R:
GGATGTAGTCCCACCTGGTGT
Band lengths:
294-542
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]