DreINT0166578 @ danRer10
Intron Retention
Gene
ENSDARG00000079308 | tor3a
Description
torsin family 3, member A [Source:ZFIN;Acc:ZDB-GENE-081104-165]
Coordinates
chr8:16561427-16564995:-
Coord C1 exon
chr8:16564871-16564995
Coord A exon
chr8:16562492-16564870
Coord C2 exon
chr8:16561427-16562491
Length
2379 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCAC
5' ss Score
4.22
3' ss Seq
GCATCTGTTCACCTTTGCAGGAG
3' ss Score
9.21
Exon sequences
Seq C1 exon
CAATATCGGTGGTGGTGCCATCAATGAGGTGGCGCTAGATTTCTGGCACTCAGGACAGAACAGGGAAGATATTGGCATGGAGGACCTGGAACATCTTCTGCGTGCTGAAGCCATGGAGGCAGAAG
Seq A exon
GTGCACAGTCAAACACGTCATAACACAACTTTTACATGTTACATGCTAAATGTCCTTTTTACATGGCTCACTAAAGAATGCTTCATTCTTTTCTTTTCTTTTTTATTAATTTTACTAATGATTTACTAATCATTTTTAAATAGTACAAACAAATATAATCAGACAAACAAACAAACAAACCACCCCTGAACGCTGCAAATTAAATAAAAATTGACAAATGTATGTTTAAAAAATTAAAATAATAATAATAGAATAATCAAGACAAACCAAAGGAAGCCAGAATTCACTCAAATAAACATTTCAGAGTTTATGTAGAAAGGATTGGAGACATTCCCAAAGTCTCCTGAATTTGTACTGTTTGTGGTTGAGGTCAGAGGTTAATTTTTCCAAAGGAAGAAAAACTGACAACTGAGAAATCCACATGGAAATAGTTGGAATTTGGGAAGTAGACCATTTTAGTAATATACATTTCTTAGCTATAAATGTAAGAGTTGTAAACGGAGGTATGATCTCTGAGTCAAAAAAAAGTCTTCAGGAATGTCATTTAACAAAATGAAAGGGGAAAAAATCAAACGTTTTCCCACTTGTCTCCTGGATTGCAGAATGAACCCCTCTCCAAAATGGTTGGATGTGAACATTGGACCAAAATACATGAAAAAAATGTGCCCTTACAAGTTTTGCACTTAAAAACAGAGGTTGGAACAAGCTGGAGACATTTTATGCAGACAAACAGGTGTAAAATAAATTCTGTGTAAAAACTTACAATTTTGTTCATGTATGGAATTTGAGGTGCATTTTGGAAAAGTACCATCAAAGATCTTGAACCAGTCTTCATGATTAAACAGAACTCCTCCTAGGTCCCATTTCCAAAGTGGTTTCAAGAAACCATAAACTGAGGAATCAGAGTAAACTAATAAAGCATAGAATTTAGAAACACGCGCTTTAAAAGGAATGCTTAATTCTGATTGCTCAATTTTGACTACCTAGGGTTATTCCTAGATAACAACCATTGAAAGTAATAACACGGCTCATCTAAGTACTTCAAGCTACTTGACCATTAATTCAAATGCATATTTACAGTATATGCTTATATGTCACGCCTCTTTTCTTGACTGTTTAATAATTAGTAGGTTAGTGTATGCTCCATTCAGCATTTGTATAAGTCAACTTTACTTTTATTTAATAGTTGATACATTATTACAGCTCAGATCATCTTTTGTGTCTGGTGTAGTTTTGTGGTAGCCGTGTAAAAATGTGCATCTAGGTGGTTGTTTACTTAGAATAAAGCCTTTCAGTCTTATTAAAATCAGCCCACTTTGTGTCAGGCATCTGATCATCCTATTTTGCTTTATTTTTTGGGAAAAACTAACTGCATAAATGTACATCATTATCCATTGCATAAGATCGTAGTTCATTTTTTCACAGTTCTTTTAGTGGCTATTACTTAATCTTATACTTAATCACACTCAAAGTTGCTGTGTATCTTCTCTGTTTTTACAGCTTTATACAGTACTGTGCAAAGGTTTTAGGCCAACCTTAAATCTGTTGCTTTACTGATAATATAATGGATATATAATTGACCACAAAACCAGTCATAAGCGTAAATTTTTGTCAATTTTCTTTTTAAATTGAGATTCATACAAGGTGAATAAACTATCTTTCAGTTGATGTTTGTTTTGTTTGGATAGGATTTTGGTTAGAGGTTGAATTATTTTGGTTTAATTGTTTAAGACATGTGAAAGGCAATGTTGGAGAGAGGCTGTTTGTCCTGGTTTGAGTTGCATTTCTACCAGTGTTGTTAGCAATAGTGTCTGAATTTATGGAATTGTGAATGTTGAAAAGTACAGATAGGTTTTAGTCCATTATGCCATGCCAAAAGACTTCAGTGGTAATAGTTTTCAATTTTTTTGCATGATAATGATTTGCTTGTTGCGGTGAAATCCAATTTGGAGAAAGAAAACAGCTGATGAAATGTCCTCCACAGGGTCCAGACCTGAATATTATAGAGACAGTATGAGATCACCTGGACAGAAAAAGAAAGATATGACACTTTAAACCTAAAGAAGAACTCTAGAAAGAGCTACATGAAGCCTGATATTAAAACATTATTTCAGAACATGTAAGGACAATTAGAACAATACAGTTTAAGTTGTTCTGGGTGCCAAGGAAAATCACAAAATAACACAGACTTTTTTTTTTTTGTTGTTGTTGTTTTTTCTACATATTTCCTATATTTTCTGTTTGTTTTTAATAAAGGAACTGATTGATTATAAATTATGCAAAAGTCTCAGGCCAACAAAGCTGGTATAGTGGATTTTTGCACAGTATGTCTGTTTTAATCCGTGATATTCCTCACTAAGCATCTGTTCACCTTTGCAG
Seq C2 exon
GAGGTTTTGCACAGAGCGAGCTGATGTCAGGCCATCTGATTGACTTCTTTGTACCGTTCTTGCCGCTGGAGTACCGTCACGTGAAGCTGTGTGCCCACGACGCGTATGCAGCTCGTGGCCTTCAGCCGGATGAGGGAACGCTGGACGAAGTGGCCAAAGCCATGCTGTATGTGCCTAAAGAGGAGAAACTCTTCTCTGCACAAGGCTGCAAATCCATCCCCCAAAGAATCAACTTCTTTCTACCGTAATGGCATTAAAGAAACACACAACAACACACTTGAATGCAGCAGAAATGACTGCTGATGACTGAAATGCACATCCTACAACATTGACAATGCAAGCAAAACAAAAAAGTGGAGTTTCGACTCTGTACCGTACACTCTTGACAGAAACAGAGGGGCTTGTTCTTCGCAAACTCTTCTGTAATTATATTTTTAGGAACTTTTTATCTACACTACAGTTTACATGCATTGAGTGTACTTAAGCAGCAAAACCTCTTTAAAAATTGTGCATTTACAGTGATGTACTTGAAGTGGAGCCCTAGCAGCCATTGACACAACATTATATTTGTGTTTTACTTTTAAAGTTGATGGAATTGATTTTTGCAACCATACATGATATCTATTTCTGAGTTAAACCGGATGTTCTAGATCATAGGTCTCAAACTGGATTCCTAGAGAGCCGCAGCTCTGCACAGTTTAGTTCCAGTTCAACACACTTACTTGTAGGTTTCAAACAAGCCTGAAGGACTCAATTAGTTTAATTAGGGTTAAAGCTAAACTTTGCAGAGCTCTGGCCCTCCAGGAACTGCATTTGACCATGTTCTAGAACATAGGGCTGCGTCCGAAACCGCATACTTCCATACTGTACAGTACGCTAAAATCAGTATGCGAGCCGAGAAGTATGTCCCAATTCATAAGTACCCGGATGATTACTACTTCTGGCGAGATTCAAAAGTGCACATCCCATGCACACTACTCTATCCCATGATGCTCCGTGAGTGAATTCATGAATAGGAGTGAAGTGACGCAACTGACGCAGGTAGGTCACGTGACCATGACAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079308:ENSDART00000102556:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]