BtaINT0152631 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009948 | TRIM25
Description
Bos taurus tripartite motif containing 25 (TRIM25), mRNA. [Source:RefSeq mRNA;Acc:NM_001100336]
Coordinates
chr19:7939851-7942647:-
Coord C1 exon
chr19:7942549-7942647
Coord A exon
chr19:7940835-7942548
Coord C2 exon
chr19:7939851-7940834
Length
1714 bp
Sequences
Splice sites
5' ss Seq
AGTGTGAGT
5' ss Score
6.96
3' ss Seq
ACTCCTTGATGCTTCCTTAGATG
3' ss Score
6.53
Exon sequences
Seq C1 exon
GTGCAGCCAAAGCCCCTCCCGTGCCGCCGACCTCAGCGTCTCTCAACGCCAAGGTGCTGGAGAACTTCCTAACCAAGTCCAGGCCGGAGCTCCTGGAGT
Seq A exon
GTGAGTAGCTGCTGCCTTGATTGTCCTTGCCTCTGTCTGGCGTGGTCAGCCTGTCCCCTGGAGGCTGTCCTTACTGCTCCTCTGTGGTTCCAGCCTGGAAGTGGTGGCAGTTCCTTCCTCCAGGCCAGGCCTCGGGCCACCCATAGCTTTAACCCACGGAGCACTCTCCGCTAATGCTTTCTTGCAGAAATCTCTCTCTGCAAAGTACGCTCTGGCCCTCCTGGTGCTGTGGGCGTGGTTCTGGCTCAGTGGGCGTGGCTCGCCCTTGCTGGTGCTGTGGGCGTGGTTCTGGCTCAGTGGGCGTGGCTCGCCCTTGCTGGTGTTGTGGGCGTGGTTCTGGCTCAGTGGGCGTGGCTCACCCTTGCTGGTGCTGTGGGCGTGGTTCTGGCTCAGTGGGCGTGGCTCACCCTTGCTGGTGCTGTGGGCGTGGTTCTGGCTCAGTGGGCGTGGCTCACCCTTGCTGGTGCTGTGGGCGTGGTCCTGGCTCAGTGGGCGTGGTTCACCCATTGCTGGAACTTTGGTACTTGGTTATCAGGGCCGGCCTCCCTGGAGCTTCCTGGCTGGGAAAGGCCTCCCCTGCCCCCAGCCCCCATGACTGATGCCAGCTGCTGGGGGAGGTGCTGAGTCACATGTCTGTGGAGCCCCCTGCACTCTGCGGTACAGCTGTTTAAGCAGGGGAAAGAAGTTCTAGGGACTTAGGGTATTCAGAGGACATTTTCCCAGGCCATTCATTTTGCCCTGGGGGAGGCCCAGGGCCAGGTGCCAAGTATCTTTCCCTGAGCCAGGGGGTGGCAGAGAGCCCTGGTCTCTAGCTTCCCAAATTCTCAAGCTCAGGATTTTCCCAAATTCTCAAGCCCTGCTGTCTGTCATTGGTCCAGGGTCCTCCGTGAGTGGAAGGGCAGGGAGGGCTGTGTCCTAGGGAGGAGGTGGAGGCCAGGCTTGTGTCCTGATCAAGGATTTTATTCAGGTCATTGCTGTGCTTGGCAGACCTCAGTTGGCTGCCCGCTGCCCCCAGTTAAAGTCGAGACCCTTTGGCTCGCCACTCGTGGCTTCAGAGGTCCCTCTTCTCTTGCTGCAGCCTCTGTGTTCCCAGCTGCCCAGCCTTCCGTGTTCCCAGCACATGTCTGTCATCCTCGTCACTCCATGCTTGCCTTCACTGTCTCCTCTGTCCAGCGTAGCCTTTCTCCCTCCTCTGCTCTCCTGTTTAATTCTTCTCATCTCCCTTTTGCTTGGCTCAGATTCCAGTCCACCCATGAAGTAAGTGTTCCTCTGTGCTCTCCCCTCCCTTGTCTCGTTACCCCCATGGCTGTGTCTCTCCAGTAGAGTGCCTGCCCTTTAGTGGCGCATGGAGTCTTCACTGTTGTCATTACTGATGCGCTTGCCTTACTTCTGGGAGTGGGAACTCCACGAGGCCAGGCACCACATCTGGTTCATGGTTGTGCGTCCTGTATAGAGCCTGGCATAAGCCAGGGGCTCAGTAAATGGTTCTGGGTGGAGGAATAGACAGACAGATGGGTGACTAATAGACACACAGATGGCTTGATTGGTGGTTAGAGACATGGACAAATGTCTGACGAGCTGGACAGAACGAATGGACGGGAAGGGTGGTTGAATGGATGGGTGGAACAAATGAATAAATACTACCAGCCAGGGAAAGGATGAAACGTGAGAGTGCTTGGAGCTCCTCGTGATTGACTCCTTGATGCTTCCTTAG
Seq C2 exon
ATGTGGTTAAAGTTGTCCTGGACTACAACACCGCCCACAGCAAGGTGGCCCTGTCCGAGAACTACACCGTCGCGTCCGTGGCTGACGCATCCCTGAACTACCGGCCGCATCCCCAGAGGTTCACATACTGCTCGCAGGTGCTGGGGCTGCACTGCTACAAGAAAGGGATTCACTACTGGGAGGTGGAGCTGCAGAAGAACAACTTCTGCGGGGTGGGTATCTGCTACGGCAGCATGGAGCGGCAGGGCCCCGAAAGCCGGCTTGGCCGCAACAACGCATCCTGGTGTGTGGAGTGGTTCAACACCAAGATCTCCGCCTGGCACAACAATGTGGAGAAAACCCTGCCCTCCACCAAGGCCACGCGGGTCGGGGTGCTTCTCAACTGCGATCACGGCTTCGTCCTCTTCTTTGCTGCGGCTGACAAGGTCCACTTGTTGTACAAGTACAAGGTGGACTTCACTGAGGCCGTGTACCCCGCCTTCTGGCTCTTCTCCACGGGTGCCACGCTCTCCATCTGCTCCTCCAAGTAGGCCGGCCACAGATGCTCGGCCGGACCACCCGCGCACTTCTCCAGGTCCCCCCCCAGGAGGGTGCTGCAGGTGGGACCCCCGGGAAGTTGCCCTAGGTCCCCCAGGGCCAAAGGGATGGGAGGGGACCTGCGGAGGGCGGGAGGCTGGGCAGATGGGGTGAGAGGTCAGGGTTGGCCGGGGATGGGTGGGGTGTTTACCTTGTGGGTGAGGAAGGCTCCCACTTCCTGGTGCCTCTCTGGCCGGATGCACCCCTCTCGGTTCTGGTAGATCTCCAGGCGGCTGAGCGGGTCTCCGGGGAGTCAAAGTCACAAGCGTCTCTTTCCTGCTGGACATAATCTGTAGCCACTGTGGGTTATTCCTCAGGCCTCTGGTGCCTGCTTCTTTCTTCTCCGAAGTAGCCTTCAAATCTTGGAGTTCTGATGACTCTTTGTAGAGCTATTTGGGTCTGTAGATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009948:ENSBTAT00000013121:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.353 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF137651=PRY=WD(100=27.7),PF0062223=SPRY=WD(100=68.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGGTGCTGGAGAACTTCC
R:
GTTGAACCACTCCACACACCA
Band lengths:
353-2067
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]