DreINT0167494 @ danRer10
Intron Retention
Gene
ENSDARG00000104396 | trim25
Description
tripartite motif containing 25 [Source:ZFIN;Acc:ZDB-GENE-040426-797]
Coordinates
chr6:21917006-21918737:-
Coord C1 exon
chr6:21918681-21918737
Coord A exon
chr6:21918600-21918680
Coord C2 exon
chr6:21917006-21918599
Length
81 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGT
5' ss Score
7.8
3' ss Seq
TGTGTGTTTCTCCTGTCTAGACG
3' ss Score
9.23
Exon sequences
Seq C1 exon
ATCAACCTGCAAGTTCATCAGCTGTGCAAAACGTTAAAAGGAGTGATCTACTTAAAT
Seq A exon
GTGAGTGAACAATAATTATACCATAGTTGGTCTTTATCTTTATCATATACATTGATGGGCTTGTGTGTTTCTCCTGTCTAG
Seq C2 exon
ACGGCACTATTCTCCATTTTGATGTCAGAACGGCTCACAAGCGGATCTCACTCTCCGAAAACAACACCAAAGCAACAGTCTCAGACGACCCTGCGAACTATCCAGAAATTCCACATCGTTTTTCTGTTTGTTCCCAGGTGCTCTGCACAAAGGGTTTCTCTCAGGGCCGTCATTACTGGGAGATCAAAATGAGCAGTAACAACTTCTGCGGATTAGGACTTGCATATGGAAAAATAGACCGCAAGGGTCCCTCTAGCCGTCTGGGCCGTAATGCAGAATCCTGGTGTGTAGAATGGTTTAACGTCAAGCTTTCTGCATGGCACAACAGCTTTGAGACGGTGTTGGAGAATCCAAATCCAAGCCGTGTTGGCATCTTGCTGGACTGCGATCAGGGAAGTGCAACATTCTATAATGTGCAGGATCGTGCGTACCCCTTTCACACGTTTGTGTTCCCTTTTACTGAGGCTGTGTATCCAGCTTTCTGGATTTTTTCAAATGGTTCCTCTGTCTCTCTGTGCAAGCTCAATAACTGAATCAATGAAAGCCAAGGTGGTCAGTTAATTGATGTTTACTTCATCCTTGGCTGTCTGAAAGTCAAGCTAAAATATCAAGCTTCAAAAGACATCCTAAAATATACCCACGGAGGACTGTTTATGTATTAAGCACATTTTCGATTTCGCAAGGTTTGTTCTTGTGCATCCAGCAAGCACTGTTTAGCTGCTGTTGATTGCTATTAATGTCCTCTATGTGTACTGGTTGTTTAAAAAAAACACAACTCCTTCCAATTAATATCAATTTGTTTTGAGCTTTCAATAAATGGATAAAAAACTATGTATATAGAGGATGTTTATGGATGTTTCCCAGTTATAGGTTGCAGCTGGAAGGGATTCTGCTGCGTAAAATATATGCTGGATAAGTTGGCGGTTCAATCCACTGTGGCAACCCCAGATTCATAAAGGGAGTAAGCCAAAAAGAAAATGAATGAATGAATGATGTAAATAGTTGATTTGTCATGTCAATGGACATGAAACAAGATTGATATGTTGATATTTAATCAATTGTGTCAATGAAAGATAACCTTCATAGGAGTGACAGGGTGTTTGCTGCAATAAAGACTTGCTCTGTTTGTTAAATGACCAACCAAATAAAGTTAAACAAAATATGTATTTAGGTTGAAATTAGGTAAACGGAACAAGGCTGTATCAGCGTAATTCTGACCTAATTATATGTCAACAGTTTGTGAGAATATTTAACAGGCACCACACAAACACATTTGTCCAAGACTTACATGATTATTATGAATATAAACATGAATATTATGCAGAGACGATAAATAAATGCTTAAGTTGTTGATCATTGCATACATTTTGTTTGCAAATGGGACTATATTTAATCTTAGTTTGCTATCACATGGTCAAAGTCTATCTCTAGTGTACTAAATATACTGTTGTCTTGTTTCCTGAGCAAAGTTAGCTCCAGTTAGATCTTTTTTAGGCATGTGAAAATCAGTCACAATGTTAAGGTGAAGAAATCATTTTGGAATATCAGTAGCCATTTGTACCTGTAAACCAAATAAATCAATTGTAAAAAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104396:ENSDART00000164891:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.308 A=NA C2=0.095
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF137651=PRY=WD(100=27.5),PF0062223=SPRY=WD(100=69.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTGCAAAACGTTAAAAGGAGT
R:
CAGAGCACCTGGGAACAAACA
Band lengths:
182-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]