MmuINT0165052 @ mm10
Intron Retention
Gene
ENSMUSG00000000275 | Trim25
Description
tripartite motif-containing 25 [Source:MGI Symbol;Acc:MGI:102749]
Coordinates
chr11:89015719-89020293:+
Coord C1 exon
chr11:89015719-89015817
Coord A exon
chr11:89015818-89016194
Coord C2 exon
chr11:89016195-89020293
Length
377 bp
Sequences
Splice sites
5' ss Seq
AGTGTGAGT
5' ss Score
6.96
3' ss Seq
GGGGGGGAATGTCTTCTCAGATT
3' ss Score
2.67
Exon sequences
Seq C1 exon
CCGCACCCAAAGCCAGTGCTGCACAGCCAGACTCTGTAGGAGTCAAGGCTAAGGTGCTAGAAAACTTCTTAACCAAGTCCAGAACGGAGCTTCTGGAGT
Seq A exon
GTGAGTAGCTTGGCTCTGTGGGTGCCTTCATGCATACCTGGGTGGATGGATGGATGGATGGATGGGCAGGTAGGTGGGTGGATGAATAGGTAGATGAATGGGTGGTCAATGCACCCATTGGGGAGTAGGTAGCTAGGTGATGTGTGTATCTGAGTAAGTGTTCTGATAGATGAATGGTTAGTTGGATGGGAGGGTAGGTGGGTAGATGGATGGGTAGTTAGATGATTGGGTGAATGGGAGAGTAGATGGATGGATGGATGGGCATGTGGATGTGTGGATGGAGAAAAATAAATGTTAACAGACGAGAAAAGCTTTAAAAGTGCAGGCACCTTGGGTCCCTTGTCAAAATTCCCTGGGGGGGGGGAATGTCTTCTCAG
Seq C2 exon
ATTTCGTGAAAGTCATCTTCGACTACAATACCGCCCACAACAAAGTGTCTCTGTCAAACAAGTACACCACCGCCTCTGTGTCCGATGGGCTCCAGCACTACCGGTCCCATCCCCAGAGGTTCACCTACTGCTCTCAGGTCCTGGGGCTGCACTGCTACAAGAACGGCATTCACTACTGGGAGGTGGAACTACAGAAGAACAACTTCTGCGGCGTAGGCATCTGCTACGGCAGCATGGAACGGCAGGGCCCCGAGAGCCGGCTGGGCCGCAACCCCAACTCATGGTGTGTGGAGTGGTTCAATAACAAGATCTCTGCCTGGCACAACAACGTGGAGAAGACTCTGCCCTCCACCAAGGCCACTCGAGTCGGCGTGCTGCTCAACTGTGACCACGGCTTCGTCATTTTCTTTGCGGTCACCGAAAAGGTGCACCTGATGTACAAGTTCAAGGTGGACTTCACCGAAGCTCTGTACCCAGCCTTCTGGGTGTTCTCGGCCGGTACCACCCTCTCTATCTGCTCCAAATAGCCAGGTCCCTAGGCTAGCCACAGACACTTGGGCTTGCTGGGGAACATCCAAGACTGGAGGGAACTCTGAACTTGTGAGTCCCTATCAGATAAGAAATTGGGAGGGGAGCTGGGGAAGGGGTGGGAAGAATCAAAGGGGAGGTTTAGGCTCAGAAAGGGGTGGGGTGATTGTCTTGTGGATGGAGAAGCATATCTACCTCCTCATGCCCCCGAGGGCAGGGTGACCTCCTGCCAGTGTTCTGGGAAATCTCTCCAGGCTGCTAGTTACTTGGGCAGAGCCTCAGAGAGTAAAATTATTAGTGTTCCTGTTGTCTTACAGAAAAATCTATAGCTGTTAGTCATGTTCTTTCTCAGGTGACAGATGTCCACCCTATTCTACTCTCTGGGGTAGCCTTCAGATCTTTGTGTTTTGATTATGGCCTAGATTTTTGTTTGTTTTAAAGCCAGCTGTAGTGGTGCGTGCACTTAATCCGAGCCTTTGGGAAATAGAAGCAGACGCAGCTTGATGAGTTCGAGGACAGCCTGATGTATATAGTGGGTTTTAGGACAGCTTGTCTCTGAAAAACAAAAATCCAGTTCTTGAGTTCTGTATGTGTATGTGTGTGTATATATATATATATATATTATCATCTCTTTGGTGCTGGGGTCTGAATCTATGGCCTTTACCCCTGAGCTACATCCCTACTCTGAATTTCCATATAACCCTTCCCCCACAAGGAACCTTTTGTAGATAAGGCTGCAGCCTGTGTTGATTTGTGTCAAGGTAACCCAGACCTGGTTGAGACGGAAGTCTCTCCCTCTTCAAGGGGCAGTTCTCTGGGGACATGTTGACGGTGGCCATGGAGTTAGAGGCCTTTCGTCCCATAGCCTAGGCCAGGGGTGGAGGTTGAGGAACAGAACCCTGGCTGGATTGTGGGAGCCCTGATGGCTTTGCTCTTACTGTTATCTTGCCTTGACAGCTGTTCCCAACAGTAATGTCCCCATCCTCTGGATTGTAGATACTGGGCTGATGGCTATAAATGCCGCCATTTGCCTTTTGTGGCTTCTGTCACAGTTAAGTGGACAGCCACACCACATTCCCAAAGCCTACCATCATGGAGACTGGCTGTGTGTGGTTGCTTCAGGAACCTTGCTAGATCACCTATTGGTGGACAGCCTGTGGCCTGAAGCGAGAGACGAGCGGGAGATAGCTGGAATCCTGTTTATCTCTAGCCACAGATTACAGGCCCAGTGATGAGTCAGACCCGTCACCTGCCCGACCCTTTCTGCTCTCTTCCTCATTTTTGAGCCAATTCCAGATGTTCATGTAGACCAAACTACAGGTTAGGAAGACTTTGAAGGATGAGGAAACAGTAAATAAATAACAAGGAGAGTCCAGGCAGTGGCTGTTTTCTCTGCTGTCTTTCACACAGTGAAAATGGCCCGGGCCATAAAGGGCAAGGATGGATGGCTGACTGGGATCTCCCCACCTCCTGTCGTGATGCCAAATCCAGAAGATGTGAGGATTTGACCTCTTGTGACAGGAGTCCAGCTCTCTCTTTCCTAAGCGGGGAGCTCCTGCTTGCAAGCATTCTTATGAAGAGAGGTCACCATAGGGAAGGTAGGCCCTAGACCTTTTCATTTGATGGATATTTGAGAACACATCTCAGGTCTTTATGGAATTCCAGGCTCTTAGTATTGGCATTCCCGACAGACGTGTGATCTGTGTCTTCTCCCAGAGGAATATTCTATTCCCTTTAAGCATCTTTACAGGGAACATGTCCCTGTAGATGGTATGTGGGCTTTGAAAGATTTCTTCCTTTGCCACACAAATTCTTGGCGATACTTCTCCAACTTTGAAGGTGCCCAAAAAGCTTCTTTGCTGGTCTTGTTTTGAGCCTTGTTTGAGGCCAGATCAGACTTGGGAAACAACTAGGTTCAGAGAAGTGGAACACCAAGGATTAACTCAGGAGTCCTGCATGGGCTCTTCTGCAGAAAAGGAGCCGGACAGTCAGGACTCTTTCCCCAGGCAGTGTGCAGCTCAGGCTAGGAAGGCATGCGTCCCTCTGTTTATGAGAGACCCAAGCAGGCAACCAAAGCCCAGAGCTGTGCAAGATGCTTTGGAGTTGTGAGTGGAGGGGTGTACCCTTGCTGTCTGGTACTTTTCTGTTTGCAGTGATAAGACCTTACCTTAACCATAAGCATTTCTGGGTAGATGGACTAAGAGTTCATCAGAGTGCACATCTCACTTGGCTCTTTGCAGAGTCAGGCAGGTGGGAAGGTGGGGGATGGCTCTGCTCAAGTCCTCTTGTCATTCCAACATGGAAGAGACTCCTAACGTGGGTGACCAAGAAAACCCCAGGGCCCTGTAGACATACAGAAATTTCCAGAAATGTTGATGTAAAATCCTGTCGTTGATCAAGATACTGGGGACTGTCTCAGTCACTGTGGTGTGATAAACTAAAGGTGGAATCTTTGTATTTTTCTGATCACTCAGAAATTGATTTTTTTTACCTATTACTAATAGCGATATTTTATATTTTCTACTATTGATTATTAATTAATTACTAATGTTTTCACTATGACTTCTTGAACCTAGTGTTTTTAGAGGTAATTCATTAAGATAATCAATCATTCATTGTACAGGGCAAGGCTGGCTGCTGTACCTTACTTTGTATGCAAACAGCATCCAGCATCCTCTCTGGATTGAGGTGTGGGTGAAAGATGTCACTCAAGCTGAAATCCACTGTCGAGGTACCCACCCCCTAAGAGCTACTGCCCAGGGCCACTGGGTGCTCAGGCCCTGCTCCGGAAGCCTGCTATAGCGTAGCTCAGATCACATGAAACTGGATAAAGAACACTCAAGAGAGAGAACTTAGCTTCAAGACAGTGCCAGGGTGGGACACTGATGAGGGATAAGCCTGCTTGAGTAACCGGCAAGCTGCAGTGGGAACCCAGAGCTTGCTTGAATATTTTTCTTGCGGTTGCATAGACTTGACCATTTCTATCGTAAGTTAAATGGTGAAATGGAAAAGTCTTGACCAGAGATAAACCCTATTCATGATCTTCTCTACATAGGACTCTTTGGCTGTTAAAGAATTACGCTTGCCTTTGTCGCTGGTGTGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCACGCGCTTGTGCTTGCATGAGTGCGTGTTTAAGTTCTCGGAATTTCCTGAGAGGATGGAGTGCCATTGTTATTTGTCTGCCTTGTGCCTGACACAGCGGAATTTATGTCAAGAGATGACCCAGCATGGTAGCTAGCCACTACCAGCTTGGTGATTGATTACAGGGTTGAGGTCAGCCCAAGACTTCTGTGAATCCTGTCTACAGATGATGGTTCAATTCCAGCTCCAGTTGAGACCTAGTGCAATTTCCCTGCAGATGAACACATAGCTGTGCTTTAGGCTGATGCACCCGTGTCCTGTGACGGCAGGACAGGGAGGCTGTGTGCTCGAGACCCATCTAGACCTTGCCCTGTTTGTGTCTTTATTTGACTGCTTCTGATTCTTTTTCTTTTGAATAAAGTTCAAATCATAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000275:ENSMUST00000107896:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.294 A=NA C2=0.006
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF137651=PRY=WD(100=27.8),PF0062223=SPRY=WD(100=68.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGTCAAGGCTAAGGTGCT
R:
CCACTCCACACACCATGAGTT
Band lengths:
358-735
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types