HsaINT0172238 @ hg19
Intron Retention
Gene
ENSG00000121060 | TRIM25
Description
tripartite motif containing 25 [Source:HGNC Symbol;Acc:12932]
Coordinates
chr17:54965270-54972802:-
Coord C1 exon
chr17:54972704-54972802
Coord A exon
chr17:54969591-54972703
Coord C2 exon
chr17:54965270-54969590
Length
3113 bp
Sequences
Splice sites
5' ss Seq
AGTGTGAGT
5' ss Score
6.96
3' ss Seq
TTGGGGTGATGTTTTCTCAGATT
3' ss Score
5.18
Exon sequences
Seq C1 exon
CTGCAGCCAAAGCCACCAGCTCACATCCGAACTCAACATCTCTCAAGGCCAAGGTGCTGGAGACCTTCCTGGCCAAGTCCAGACCTGAGCTCCTGGAGT
Seq A exon
GTGAGTAGCTTCGGGGCTGGTGCGCGGTTCCACTGGTTCTGTCTCTCCTGCGCCGCTCTGTGCAGCTCTCTGTGAGGCCAGCTGGCCGGCTATATCAGCCACTCCCCTTCACTTGTCCTCTACTTTGTTGCTCCCTTATTTTCTCCCAGTCATCAGTGCCTTTCTTTACTTTTCCTAACTAGCTCAGATTTCACAATCGGTCCTTTGACTCTCCCTCTTGCCGTCTAGTCTGGCCCAATTGAGCTCACCTTTCTCTGTGGGTCGGCGCCTGCATGTCCTCTGCAGAGAAGGCAGGGCGATTGCGGTCACCGGCCTTCACCGGGCGTCCCGTTGCCGGCATGCCTGCCCTGCATCTCCTGTCTCCTCCCCACCACTCTCCAGAGCCACCATTCCCAAGACTTCCCACTGGCCATAGCTCCATCCTTCTCCCTGTCCCGCCCACCTTCTGCTTCACGAAAAAGACAGACACTGTAGAAGGGGCTCCCCCTGCTCTGTTATTGACATCGCATCTGCATCTACTGTGCCCCCTTCCTCGCCTCCTGGCCCCTTTCCCAAGACCCCCTGGCCCTGGGCTCTGGAGTCTGCTCCCCACACGCTCTCTGGAATCTTCTGCTCTCTCTTAGGCCTTTCCATTCCCATCTCTTCACCCTCAGCATCTCTACCTAGGCTTGCCTATCTGTAGCACGTTTACATCTCTCCAAATCACAAAAACAAACCTAGCAAAACTGTCTCAGCTGCAGCTCTGTTTCCTGCCTCCCTTTCACCCGAATGCTTGTTAAAAATACAAATTACTAGCTGGGTGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGCCCGAGGCAGGTGGATCACCTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGCAAAACCCCATCTCTACTAAAAATACAAAAAATTAGCCGGGCGTGGTGGCACATGCCTATAATCCCAGCTACTTGGGAGGCTGAGGCACGAGAATCACTTGAACTTGGGAGGTGGAGGTTGCAGTGAGCCGAGATTGTGCCACTGCACTCCAGTCTGGGCAACAGAGCGAGACTCTGTCTTAAAAAACAAACAAACAAACAAAAAACCCCAAAAACCAAATTCCTGGGCCCTGTTCTAGCCCTACAAGATCAGACTCAGGCAAGCACGGAAAGCTGTATGTTTAGCTCATTTCCTCCATGATCCTTTTGAGGACAGTTGGGGAAAAGCAGCTCTGCAGATTTTCTACATTGGTGGCTCTCAACTGTGGCTGCGTGTTGGAATCCTGGGGAGCTTTTTAAAATCCCCGATGCCCAGGCTGTCCCCCAGACTGGTTCATTCAGAATGTTGGTGTTTGGCTGCCCAGGGTTGCAATGTGGGGCCGAGGTGGGAGCCTGAAGTCTAATCCTCGTGCCACTGCATTCTGACCTCTGTCCTGCCCTTGACCCAGGCAGCTCTGAGGTCATCAGGGTACTCCGTGTCACAAAATCCAGGGACGCCTTTCAGCTTTTATTTAGCTTCACCTGTCAGTGGCATTCCTCCTCCTTCTGACACTCTCTCCCCTTGCCGCTTGAGCTGCTATACCCCCCTGGGTTTCCATCCACCCCTCCTTTGCAAGCTCGTCCAACCTGGAAGTGGGTGGAGTTCCGTTGTCAAGGCCAGGCCTAGGGCCCTCCCACTTTCCGTCTTCTTGTTTCTTCTGCACCCACGTGCAACACTCCAGGCAGCACCTGCCAGTGGTACCCACTTCCATGTGGAGGCCAAAGCCAATCACTGAAAAATATAGCCCTTCCTTTATCATAAGCAGCTGCAGCAGGCTTGGTGGGGATCTGTGGGTCCCTTGCTTTTTCAGGGCTGGCCTTCTTGTAGCCCTCCGCTGTCCCTGCCCCCCAAGAGAGGCCCAGACCAGCCCTGGGCTGCAGCTAACTCTTGCCCAAGCTGCTAGCGGCGGTGCTGAGCCACGTCTTTCAGGAGCTGCTGTGCACTCTGTGGCAGCCGCATAAACAGGGAAAGTAAAATTCTATCAACTTAGGGCCTTTTCCACCCCCAGCTTATTCATTTTGCCTTGGGGGAAACTCGGGCTCCAGTGAAAAGTGTCATGCCCTGAGCCACCTAGCAAATGAGTGCCTCGCTTGGCTCCCTGCTGCCCACCAGTTAAAGTCTAGCCTCCTAAGCCCTTCCCTTTCTAGCCCCAACATGTTTCCCTTCTCCTGCTGCATCTGTGTTCCCAGCCACCCAGCTTCCCCGATCCCAGCACATGCGAATCCCCTTGGCACTCCGTGGCTTCACTCTCACTGTTCCCTCTGTCTGGAACAGCTTTTCTCTCTCTGTTCTCCTCTGTCTAGTTCTCATCTTCTGTTACTTGGCTCCAATTCCAGCCTGCCAGTGAAATGTTCCCCAACTGTAGCATCAGTTGCCTTGTCTCTGTGTCCCTACAGTGTGTGCTTACCCTTTTGGCAGAGTGTGAGTCTCATGGTGTTGTTACTGATGGACTTGCCTTGCTTGTTGGAGTGTGAACTCCATGAGGCCCGGCACCTTGTCTCTCTGGTTCATGGTTGTGCATCTTGTGCCAGAATCTGGTGTCAGTCAGGTGCCTGGTAAATGGTTTTGGATGGATGAATGGACAGACATACGGATGACTGATAGATGATAGATGGCTGGCTGGCTGGACAGAATGGATGGATGAATGGATGGATAGATGAGCTGATGAATAATGGATGGGTGGATAGATGGGTGGATGGATAAATGGACAGATGGATAGATAAGTGGATAGATTAATGAATGAATGAATGGATAAATGGAAAGGCAGAAGGATGGATAGATAAGTGGATAGATGGATGAATGGAAGAATGGATAGATAGGTAGATAGATGGGTATATGGATACATGGGTAGATGGATAGATGGATGGATGGATACATGGATGGATTGATGGATACATGGATAGACAGATAGATGGATGAATAGACAGACAGATGGATAGATGAGTGGATGGATGGACCAATGGGTAGATGGGTGCATGGATGGATAAAACTAGTGAATAAATAGTACCACTTTGGCAAAGGTCTAAAAGAGCACTTTGGGCCCCTTGTAATTAATTCCTTGGGGTGATGTTTTCTCAG
Seq C2 exon
ATTACATTAAAGTCATCCTGGACTACAACACCGCCCACAACAAAGTGGCTCTGTCAGAGTGCTATACAGTAGCTTCTGTGGCTGAGATGCCTCAGAACTACCGGCCGCATCCCCAGAGGTTCACATACTGCTCTCAGGTGCTGGGCCTGCACTGCTACAAGAAGGGGATCCACTACTGGGAGGTGGAGCTGCAGAAGAACAACTTCTGTGGGGTAGGCATCTGCTACGGAAGCATGAACCGGCAGGGCCCAGAAAGCAGGCTCGGCCGCAACAGCGCCTCCTGGTGCGTGGAGTGGTTCAACACCAAGATCTCTGCCTGGCACAATAACGTGGAGAAAACCCTGCCCTCCACCAAGGCCACGCGGGTGGGCGTGCTTCTCAACTGTGACCACGGCTTTGTCATCTTCTTCGCTGTTGCCGACAAGGTCCACCTGATGTATAAGTTCAGGGTGGACTTTACTGAGGCTTTGTACCCGGCTTTCTGGGTATTTTCTGCTGGTGCCACACTCTCCATCTGCTCCCCCAAGTAGGCAGGCTGTAGGCACTTGGGCTGACTGCCTGCAGAAGTCCCAAGACCCTAGTGAAAATACAGCAGGCAGAACTCTCCTTGGATAATTCCCCAAGAGGTCCCAAGGATTGGGAGCATGGGAGGGGAGCTGGCGGGAGGGTGGGAGGTGGGATTTAGCCAGGAAAGGGGTGAGAGTGATTGTGTTGTGGGCGAGGAGGCGTTTCCACCCCCTGGTGCCTATCAGGGCAGGGTGACCTACTCCCCATTGTTCTGGAAATCTCCAGGCTGCTGGGCAGCTGGGCAGAGCTCTGGGAAGTGAAGTCATGAGTGCCCGATTCCTCTTAGAGAAAATCCATAGCTACTGTAGGTTCTGTCTTGGGCCACTTGGATCTGAAGGCTGCCCCTTTGCTCTCTGGGGTAGCCTTCAGATCTTGGTGTTTTGAATTCTTACTATAGATGTTTTTAAAGTTCCAAAGTCATTGAGTTTCAATGTTACATAAACTCCATTACCCGCATGTTGGGGCTTGATCTCCTGGTTATTATCTGTGCTTGAGGAAACACCCACAGCAGTCTCTACCCAGAACAGTTTCCTAAAGAGGCATACCCTCTTCCTCCACTGGAAAATAGTGCGTTCCCTTCCTACCCTGCACACCCATCGCCCCCACATTGATGGTTTTCAAACAGCAAACTTTTCAGCTAAAGCTTCAAACCATGATTGGAATCAGCCTGTGTTGGATTTGTGATTCAGGGTCATGGTGACCCTGATCCAGTTTGGGTGGAAATCCTTCCTAAGTATCATAAGAAGCATCTTGGCAGAGATGCTTTGGTGGCAGCCATGAGCTTTGCTGGAGGCCTTGCTTCCCATAGCCTTGGCTGTGGGGCAAGGAACTCTGCCAGGCGAGGGGGATGCTGCCCTGGATCAACAGAAGCCTGGTGGGTTTGCTCGTGTTAGAGTGTCCTGCCTTCTTACTGACAACTCTTCTCGGTGATAGCCTCTCTTCCCTGGATTGTGACATATGGAATGACAGTGCAGGTACCACCGAGGCTAGCACAGTCAAGCCTCCAGCTAAGCTGGATCCCTGAAGCCTGCTATCATGCAGACAGGCTATGCGGCTGCCTCGGACCATGCTAGGCCACTTGCTGGGGTGTCAACCTACCACCAAAGGGGTCTTTTAGCAAACCTCATGGGGAACAGGAACATTCCTGTTCATCCCTGGCCACAGGCTGCAGACCCAGCACTGGCCCTTGCGTGAGTCAGAGCCTGGGGCTGGCCCTAGCCCCTTCTACTGACTTCCTCATTTAAGCCAATTATATAAGCTCACATTGATCAGGGAGGGAGGGAAAGAGCTAAAGAGGGTCACACAAGTGGCTATTTTCCCTGCAGTGTTTCTGTGTGGTGAAAATAACCCAGTCCACTAAGGGGCGGGAGTGAATGGATGGCTGGATTTTCCCCAAGCTCCTTATAGCCTAATGTTGTCAGGATGTGAGTATGAGGAATTTAGCCTCTTATAGTGAAATGAGTCCAACTCTGGGCTTTGCTTAGAGGAGAGCTCCTGTCAGGCTTCCTATAATATGAAAAGAAGTCACCATTGGGGAACTAGAGACCCCAGACCTTTTCATATGGATATTTGAGAATGTAATGCATCTCAGGCCTCGTGCTGGAACTCTAGGGCACTCTAGGCAGGCTCAGAACACTTGATATTCCTGACAGCTACACACCTGACATGCAGGTACATACCTGATCGGTGTCATCTCCTAACAAGGATTTTCAGTTCCTCGGGAGAGCAATAATCTTTGTAGGAAAGACATCCCTGCAATAGGTGATATGTGGTCCTTAGAAGTTTTATTCCTTTACTACTTGGAAGAAAAGTTCTTTGGTGATTCTTCTCTGCTTTTGAAGATGATCAAAAGCATCTTCATTGATTTTCTGAAACGAAAGCCTTGTCTGAAACCAATTAATACTTGGGAAACAGCTGGGCTTGGAGGAGTAGAATGCCAGAGATAAATCCATGGCTCCTGCTCTGGCTCTCTTCTGCAGAAATGAGGGCAACAGTGAGGCCACTTCCCTGGCAAATGTGCAGCTCAGGATAGGGAAGCATAAGACCCTCTGTTTAAAAGAGAGTCAAGTAGGTAACCAAAGCCAAGCTCTGTGCAAGGTGCTTTGGAGTTGTAAATTGAGGAGTGCATCCTTGCTGTCTTGAACCATTCTGTTTGCAATGGTGAGACCTTACATAACCTAGCCTTGCAGGGCCGCCACACAACCCTGGAGTCCTAGAGTTGGAGGAACCTTTGTATCCATCTGACTTCTCATTTTGCAGAATATGATGAGAAAGTAGAGGATCGCTCTGTTCACCACTCTTGCTATTCCATTAGTGGGGAGATGCCTGCTAGCATGTGTGAGGGGAACACTCTGATACACTGGGAAGTATCGGAAATTCCCAGAAACACAAACATAAAATAACTCTCCTAGACCCAGGTACTGGGGACTGTCTCAGTCCGTGTGGCATGATAAATAAAAGGTTAGGATCAAGTCTTTGTATTTTTCAAGATGTGGTAGCTGATTATTCCTGTTTTAAGTACTCTGAAATTGATCTGTGATCAATAATACTAATATGTTATCTTTTACCGTATTCTGCCTCTCACTATTGATTTTAATTAGTTAGGAGTATTTGAGCTGTTATTTCTTGAGCTTAATATTTTTTTAGAGTTAACTCTTTAAGGAGATAATCATGGCTGTAGACAAGGCCAGGGCTGGCTGACGTGCCTTAGAAGGTTTGAATGCAATAAAGCGGTGTTTGGCGTTCTCCTGCATTGTAGTGCGGGTACAAAATGCTATTTGTTCGTCATACTGTTGTCAGCAGATGAGCCGCCCACTACAGACGGCTACTGCCCAGGGACCTGCCCAGGCCCCACCCAAGGGCTCCCAAGGGTTGAGATTTCTGCAGACCTATAGCCAGCACACTTAGTCCTGCCCTATATAGAGTTCCTCTTCGGGAAGCTTTTGATAAGGAATTCTCAGACCGATAGGATGTCTGTCTGGGCTTTGCTGCGGGACAGTCTAACTGTGGGGGCTAGGGGAAAGCAGGAGAGTATCGATCAAAGAGTAAGCCACACACGGATAATCAGTTACTAGGGATGGAGGTGTGAGGGTTCATTATATTATTCATTTTACTGTTGTATATGTTTGAAAATGTCTATAATAAAAAGCTTTAAAAAAAAAAAAGAAACAAAAATAGTTCAGGCCAGCAATGGGCCCTCCATGTTCAGTGGATTTTATCCTTGTTTCAATTGGGGTAGGAGTTCCAGGAGGTGTGGATTGGAGGTTGTCTAAAGAATTGAACTGGCCTTTGTCCCTGCTTCCTGGGAGGGAGACTTTCAGTCCTTGACATTTCCAGGGTAATAGGAGTGTCTTTGTTATTTGTGAGGCCATGGGATCACACCTGAGCTTATGCTAAAAGGTGGGATGACTCAGAGCTGGGGCTGGTCACCAGACAGACTGACCATGTGATTAGAGGTTTGAGGCTTTGAGTCAGCCTGACCTATGGGGCGGGGGACTGGAGGCTGAGTTTAATCATCTGGCCAGTGCTTTAATCAGTACATCATGAAACCCTAATAAAAACTCTGGACACTAAAGCTCAGCATAGCTTCCTGGGTGGTGAAGCTGTGGCTATGCCGGCAGGGCAGTGTGCCCTAATTCCACGAAGAGGGGGCATGGGAGCACTGTGCTCAAGACCCTTCCAGACCTTTCCCTGTGTCTTCCTTGGCTTGTGGAGCTGATTTGTATCCTTTATAATAAAACTAATCATAAGTATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121060-TRIM25:NM_005082:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.324 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF137651=PRY=WD(100=27.7),PF0062223=SPRY=WD(100=68.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)