BtaINT0152974 @ bosTau6
Intron Retention
Gene
ENSBTAG00000047424 | TRIP10
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G3MYE4]
Coordinates
chr7:18970136-18970399:-
Coord C1 exon
chr7:18970277-18970399
Coord A exon
chr7:18970193-18970276
Coord C2 exon
chr7:18970136-18970192
Length
84 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGA
5' ss Score
7.4
3' ss Seq
CTTCCTACCTCTCTCCGTAGGAG
3' ss Score
11.9
Exon sequences
Seq C1 exon
CTGCTAGGATCAGTTTGAGGTGCTCGAGCGGCACACGCAGTGGGGTCTGGACCTGTTGGACAGATACGTGAAGTTCGTGAAAGAGCGGACGGAGGTGGAGCAGGCTTATGCAAAGCAACTGCG
Seq A exon
GTGAGACCCTAAGGTGGCCGCGCCCTGGGGTTAGGGGGAGCGGTTGGAGGACTGGGGGCTCAGCCTTCCTACCTCTCTCCGTAG
Seq C2 exon
GAGCCTGGTGAAAAAATACATGCCCAAAAGACCTGCCAAAGATGACCCTGAATCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047424:ENSBTAT00000063911:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.700
Domain overlap (PFAM):
C1:
PF0061118=FCH=PU(44.2=97.4)
A:
NA
C2:
PF0061118=FCH=FE(22.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCAGTTTGAGGTGCTCGA
R:
CAGGGTCATCTTTGGCAGGTC
Band lengths:
167-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]