HsaINT0172675 @ hg38
Intron Retention
Gene
ENSG00000125733 | TRIP10
Description
thyroid hormone receptor interactor 10 [Source:HGNC Symbol;Acc:HGNC:12304]
Coordinates
chr19:6741010-6741281:+
Coord C1 exon
chr19:6741010-6741125
Coord A exon
chr19:6741126-6741224
Coord C2 exon
chr19:6741225-6741281
Length
99 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGA
5' ss Score
7.4
3' ss Seq
CTACCTCTGTCTCCCCTTAGGAG
3' ss Score
12.05
Exon sequences
Seq C1 exon
GATCAGTTCGAGGTGCTCGAGCGCCACACGCAGTGGGGGCTGGACCTGTTGGACAGATATGTAAAGTTCGTGAAAGAACGCACCGAAGTGGAACAGGCTTACGCCAAACAACTGCG
Seq A exon
GTGAGACCCTGGGGTGGACGCTACGGAGGACGCGCCTGGGGCGACGGGGAGCGGTGGGAGGGCTGCGGGCTCAGCCCTCCTACCTCTGTCTCCCCTTAG
Seq C2 exon
GAGCCTGGTGAAAAAATATCTGCCCAAGAGACCTGCCAAGGATGATCCTGAGTCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125733:ENST00000313285:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.350
Domain overlap (PFAM):
C1:
PF0061118=FCH=FE(40.4=100)
A:
NA
C2:
PF0061118=FCH=FE(20.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGGACCTGTTGGACAG
R:
GGATCATCCTTGGCAGGTCTC
Band lengths:
127-226
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains