RnoINT0156157 @ rn6
Intron Retention
Gene
ENSRNOG00000055524 | Trip10
Description
thyroid hormone receptor interactor 10 [Source:RGD Symbol;Acc:621145]
Coordinates
chr9:9700868-9701131:-
Coord C1 exon
chr9:9701016-9701131
Coord A exon
chr9:9700925-9701015
Coord C2 exon
chr9:9700868-9700924
Length
91 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CATCCTGCCTCTGTCCTTAGGAG
3' ss Score
11.5
Exon sequences
Seq C1 exon
GATCAGTTTGAGGTGCTGGAACGCCACACACAGTGGGGGCTGGATCTGTTGGACAAATACGTGAAGTTCGTGAAAGAACGCGTCGAGGTGGAGCAGTCTTATGCGAAGCAACTCAG
Seq A exon
GTGAGCGCGAGGGTGGGTGCTCTCTGCTCTGGGACTCCGCAGGAAACCCTCCCGAGGGCTACTTTCTCAGCCATCCTGCCTCTGTCCTTAG
Seq C2 exon
GAGTCTGGTGAAAAAGTATCTTCCCAAGAGACCTGCCAAAGATGACCCCGAAATCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055524:ENSRNOT00000082341:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.217
Domain overlap (PFAM):
C1:
PF0061118=FCH=FE(40.4=100)
A:
NA
C2:
PF0061118=FCH=FE(20.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGTTTGAGGTGCTGGAACG
R:
TTTCGGGGTCATCTTTGGCAG
Band lengths:
167-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]