MmuINT0165494 @ mm9
Intron Retention
Gene
ENSMUSG00000019487 | Trip10
Description
thyroid hormone receptor interactor 10 [Source:MGI Symbol;Acc:MGI:2146901]
Coordinates
chr17:57390165-57390434:+
Coord C1 exon
chr17:57390165-57390280
Coord A exon
chr17:57390281-57390377
Coord C2 exon
chr17:57390378-57390434
Length
97 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGC
5' ss Score
8.69
3' ss Seq
GCCTCTGTCCCAACCTTTAGGAG
3' ss Score
9.74
Exon sequences
Seq C1 exon
GATCAGTTTGAGGTGCTGGAACGCCACACGCAGTGGGGGCTGGATTTGTTGGACAAATACGTGAAGTTCGTGAAAGAACGCGCGGAGGTGGAGCAGGCTTATGCTAAGCAACTCCG
Seq A exon
GTGAGCATGAGGGTGGGTGCTCGCTGCTCTGGGACTCCAAGGGGAGACCGCAGGAGGTCCGCGTTCTTAGCCTCCCTGCCTCTGTCCCAACCTTTAG
Seq C2 exon
GAGCCTGGTGAAAAAGTATCTTCCCAAGAGACCTACCAAAGATGACCCTGAAGTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000019487-Trip10:NM_134125:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.250
Domain overlap (PFAM):
C1:
PF0061118=FCH=FE(40.4=100)
A:
NA
C2:
PF0061118=FCH=FE(20.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGTTTGAGGTGCTGGAACG
R:
TGACTTCAGGGTCATCTTTGGT
Band lengths:
170-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: