DreINT0167903 @ danRer10
Intron Retention
Gene
ENSDARG00000005679 | trip10a
Description
thyroid hormone receptor interactor 10a [Source:ZFIN;Acc:ZDB-GENE-041114-105]
Coordinates
chr3:54214777-54220241:-
Coord C1 exon
chr3:54220126-54220241
Coord A exon
chr3:54214834-54220125
Coord C2 exon
chr3:54214777-54214833
Length
5292 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
CTTTCTTTTCTGTTTGCCAGGAA
3' ss Score
10.26
Exon sequences
Seq C1 exon
GACCAATATGACATTCTTGATAAGCACACACAGTCTGGCCTGGACCTGGTGGACAAATACATGAAGTTTGTAAAGGAGCGAACAGACATCGAACAGAATTATGCCAAGCAGCTAAG
Seq A exon
GTAAGATCTCCTTATATATCTAGGCAATCTGGTTAGTCTCTGTGTTGGTGTTTACATGTATCTGCATGCTTCCCGTGTGTGTTTATCCAGAGCTGTGGCTGATTGTGAAATATTTGGGTCTCATGACTTGTTTGGTGGCTGAGCTGAACTTGCTGACACCTCTGAGCTCTAGCATTGGCTTCGGCCCAGAGGATAAGCGTTTCCTCGTCTGCTCCACCAATCATTCATGACCAGGCCTTGATCTCTGCCAGTTTCGAGCTTTACCTCGGTCTTCCCTCTGTCCCGCTGTGAGAGGAAGTAGGAGCAGACGAGCATATGACTAAGGGGATGTGGATGGAGAGAGTGAAAGTGGAGAACAGCTTAGCGTTCGTTTTGATTTCTCTTCTTGGGAGAAAAAGAAGGAAATAAATGCTCTGGTTTTGAGTACTTGATATTGGAAACATCTGACATTGCGATATTTTGTTTTGCTGGAATATATATTGCAATATGAATACAATTAGCTCTATTTGGAAATATTTCATCAATGTAGATCGACTGAGATGATCAAGACTTTGTCTATGCAGTGCATCTGCATAGATGAGCAATATCACCGGAGTAGCATTGTGCTATGGCTGTATATCAGCACTGGTGCTAATATACAGCCATAGCACAATGCTACAAGTGTAATATTGCGTTTATACAGCAGTTCGACGGCACAATCTTGTACATAAAAAAGAAAATCAAACACAGAGAGTCTAAAACCCTTTCGTATTAGGAACTACTTTCTTTCACATCTGCAGCTGACGTCAGAACAGCAGAAGCCGTTACTAATTCACCAACGTCTCTTTAGAGCTAGTATTTGAATTATTCTCTATAGCGCAATGTAAAGCGGCGCTTCTGGTGTGTGACCCCCTTAAGGTGATGACAAAACAGTTGAATTTTGTTCACATTTTCGGATTATAAGGCTGAACGCGACACAAAATGCCATCCGTCTACAGAGATTTCTCACCAAACTGCTGTTGTGTTTGCGATAAGGAGGGACAAGGCTGAATCCAGCTTCTTATTCGCAGCTTCTTATTGACTATCTGGTCCACCCTAAAACCACGAGGCTTCCGTTTTTCAGCTTTTTAATTTGCGCTCGAGAACACACTGAGCAAGGGCTTATTATGCGGTTATGGCTCCATCTTGTGGATAGACAACGTCAACCGCCGCAGACGAGCTCTCAGAAATTGTAAATATTTTAAAATGGGCACTATTCTTACAAATAAACTGCATAGTTGCAATCTAAACAGCTACATTCTCGACAGAAAAAGCCTCAAAAGTACATTTTGTTGTCTAACAACAGTAATATTTGTCAAACTGTAGCGTCTCTGCTTGTTGCTTGCTGTATGTGGGCGGAGTAATACACAGAGGTGAAGGGTGAGGAGGCCTTTGTGTGATGTTACTGGCAAAATATCGCACGGCTATCAGCCAATCAGATTCAAGAATCAGACAGAACTGTTGTATAAATTATAATAAATTACAGGCAAAAAGAAATAAATAAACAGTCCTTTTATTTTTTTAAGGAGTCTAACAGTATTTAAGTACAGAAATTTAACAATCAAATGTAAAATATCTCAGTCATCACTGTGTATATGAAACAAAAAATTGCATTTAATAATATCTATCATCTTTTAATGTTTAATAATAATCAAATCTTGCAATGCGACTACTTTAGATATGCTCATTGCGATATTGATGCTTAAACGATATTCATTCACCGGCCACTTAATTAGGTACACCTGTCCAACTGCTTGTTAATGCAAATTTCGAATCAGCCAATCACATGGCAGCTACTCACTGCATTTAGGCATGTAGACATGGTCAAGACGACATGCTGCAGTTCAAACCGAGCATCAGAATGGGAATGAAAGGTGATTTAGGTGACTTTGAACTAGGGTTGAGTTGATTGACGATGCCATCGTCTATCGCCGATAGATATCTCGATGCAGAGCCGGCGATCCTTCACCCCGGCCCCTGTTGCAGCAACCTGCTCGTGAAAAACAAACTCAGGCACCTTTTATACTAATACATCTAAGTTTATGGCAAAATTAAACAAAAACAATCCACGTCTACACTGTTCTATGTATATAGAATAATATAGATGGAAATAAAACAAAACCAATCAGTTTTATGGAATGACAACAATGATAGTAATGTAATAATAGTAGTAATGGTAGTAAAAAAAATTACAACAACAACAATATAGGCAGGGGACGATAACCGTTTTCAACGTATACCGCAGCTTGGAAAAGTCAATGTTTTAAAATCGCTATAATTTCTGCTATACCGTTCCGAAGGTATGTGTAAGATGTTTTATTTACTTTTTTTTGGACAAAAGTATCTCCAGCAGAAAAGACATCCAAAGATGCTATTTTAAACTGTAAATAAATCTGAGTTTTGAATCTAATGAAGACAGCAGAAGTCAATGATTCAATTATTTAGCCTGACATGTTTACTGCTCCAAAATATTTTAAATGTATCTTAAAATAAAAAATACTGTTATATATTGTGAAAGTTTTAGTTTTTTTTTACCCAGACTTTTAAAAAGAATATATTTCAGAGCAGTAATCACAAAACTGTGAAACCGTGATATTTTTATCCAAGGTTATTATACTGTCAGAATCCTTTACCGACCAATGCCAACAAACAATAATAAAAAGATAATGACAATTAAAAAAATAATAATAAACACTTTGTATTTCCTTGTTTTTTCCAATTGTCTTTTATTGTGCATAAACTAAATTCACAACTTTCAGGGTTCTTACAGGGCTGGAAATCCTGGAAAATACTTGATTTAAAGTGTTTAAAGGTTAGAAAAGTGCTTAGATTTTGGACAAAGTGTTTAAACCTGCTTAAATTTGAAATTGCAGGGTTTGAAATTGCGAATGTTTTGGTTGCATATAAGCCTAAAATTTTAACCATGCAAACTCAAAATATATTTGGGGGCATTTGTGCAAGTGCATAAAATTGTTGTGAAAATGTAAAGGTCTGTATACGAGAGAATGAAAATAACACTGACAGATTTAGTTTTAAAAACCACCTCAAGTTGCAAATAATGACACATCTGATCAGTGATCATGTGGTGAATGTTAATCCACCCTTTGCACTTTTCAAAGAGTGGATAAAAAAACTTCCGGTGAGTTAAAGTCCGCTATTAAAATGATTCAAGTATTCACTGTAAAGTCTCTGAATGAATGCCAATAAATTTTTGCTATAAAATATTCAACAATTTAAGGGTGCTTTCACACCTGCCATATTTAGTTAGATTGAATCGCACTAGAGTTCGTTTTCCCTTTTGGTGCGTCTTTGGGCAGGTGAGAATGCAGCAATCATACTCGAGTACGGACCAAAAGCGGACCAAATAAGCATACCGAGACCTGCTTGAAGAGGTGGGTGAGAATACGATCCGTACTAAAACAGGTCCAACCGCAAAAAGTACTGCACCTTTTGGACTAATTCAGCTGCCGTAGGCCAATGCGCTGTGCATTATGGTATATGGAGGAGAAATATTTGTTGACAGCTCTTTACCAACAGAGAGAGAGAGGGGAAAACATTACCTAATGGGTCGTTGGTAATATTTTCGCAAGATGACCATGTCGCAGTTTAGCTAAATGAATTCACGCCTCCTCTTGAAGTGACGAGCGATGCATTAGAACACTGTTTTCCAGCCGTGGCCGCGCTTTATTCTTGAAATGTATAGTTTGTCTAAAGCAGGGATACAATCAGTCAACGAAGTTGTCCCTTTGTCCCTTTGTTTACCTGCGGGAGTTAATTGGCATTTTCCTGCACGTGAATCCTGACCAATCATAAGCAATTTAGGAAATATGTTTAACAACATCTGGCCAATAAGAGATGTGGATTTTGTCACAGGACTGCATTTTGGTTTGTTTTAACTGGTTCAGACCAAAGCCAGCAGTGTGGTGTGAAAACGACCCAAAGACGGCAGAAGATGCAACAATGTATCATTTATTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATAGTGTATATATATATAGAGACAGATATATATATATATATATATTGTTTAAAAAAAATATATATATATATATATATATATATATATATATATATATATATATATATTATATATATATACAGGATATTGCTGAACGAATCACTGGCACTACCCTATCTACACTTCAAGAACTGTACTCTTCCAGAGTGAGTAAAAGGTTCTCGCAAAATCACTCTGGACGCCTCGCACCCAGCACACTACCTGTTCGAACTGTTACCATCTGTTCGGTGCTTCAGAGAACCAAGCACATAAACAGCCAGACACAGGAAAAGTTTCTTTCCTCAGGCCATCTACCTCATGAACGGTTAAATATCCCCAAACTGTGCAATAAATATGTGCAATAATTTCTCATACGCACTTGCACACAGCACCTTATATCAATTTAAAATGCAATACATTCTCCATTCGCATTTGCACAAAGCACCTTATAAACTGTATATTTATAACAATATGTACATACAATTCAACATCCAGATTGCATGTCTGTTTAATGTTTATCATCTTTTTTTCTCATATTTATTTTGTGTTGTCACTTGTCACTTTATGTACACTGGAAGCTTCTGTAGCCAAAACAAATTCCTTGTGTGTGTGTGTGTGTAAAGCACACTTGGCAATAAAACTGATTCTGATTCTGAAGTATAATCGTAATTTACAGTGGTTGTAATGCTGGAAAACCATAAAGATGCACCTTGAAAGTGCTTGAAAAGTGCTGAAATTTGAAGTTGGAAGAACCCTGAACTTTGTTTGTACTTTATTTAATAGGTCTAGAGCAATATAAAACCATAATATAAGTGTCCTGTGGTATTTATATCATGTCACATAACACAGCATTTGCACTTTCATTTTCAGTTTAGACAAATAATTAATTTCTGGAATCTCCCTTTCTGCCCTAATTTCTGCCAATTGTTACGGGAAGACAAATAAGCAAATAAAATTTCCTTCGACAAACCCAAAACACCCTGATGTTTGTTCGGGAAGGATCAAATTTTGGAAACACAATGTTCCATGCAAATGCTTGACAGCCACCTGCTCTAGCAGCACTTCTGCAGTTTTGAGTCTCCAGCGTGGCGTGTTATTCAACCTTTTGCTATTTGAAACTTGAGCGCCTGCTCATGACATTATTATGATGTAGTGCCTTTCTTTCTTTTCTGTTTGCCAG
Seq C2 exon
GAATTTAACCAAGAAATACAGCCCTAAACGAGGCAGCAAAGAAGAGCAAGAATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005679:ENSDART00000040855:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.650
Domain overlap (PFAM):
C1:
PF0061118=FCH=FE(40.4=100)
A:
NA
C2:
PF0061118=FCH=FE(20.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]