BtaINT0154278 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010477 | TTC21A
Description
tetratricopeptide repeat domain 21A [Source:HGNC Symbol;Acc:HGNC:30761]
Coordinates
chr22:12501530-12501988:+
Coord C1 exon
chr22:12501530-12501627
Coord A exon
chr22:12501628-12501787
Coord C2 exon
chr22:12501788-12501988
Length
160 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
3' ss Seq
CCCGGGCCTGCTCCCCACAGGTG
3' ss Score
11.05
Exon sequences
Seq C1 exon
GGATCATCTGGTGCCAGATCTTAGACGGCCACCTGGAGGAGGCCGAACACCAGCTGGAATTCCTGAAGGAGGTGCAGCAGTCTCTGGGGAAGTCCAAG
Seq A exon
GTCAGAGCCCTGTGGGGGCCGAGGTTGCCCTGGGATCCGGCCCCTGCCACACCCCCTCCCTCTCCCCAACCCCAGTTGCCCCTTGGACTTCTGCTTCTCCTTGGCCTGCTGGCTCTGCCTAGTGAGCGTTGCCTCCAAGACCCGGGCCTGCTCCCCACAG
Seq C2 exon
GTGCTGGTTTTCCTCCAAGCCCTCCTGGTGTCCAAGAAGCATAGGGGGGAGCAGGAGGCCACGACGCTACTAAAGGAGGCCGCCGAGCTGCACTTCTCCAGCATGCAGGCCCTCCCCATGAGCTCTGAATACTTGGAACGGCTCGACCCCATCTTCCTGGTCTGCATCGCCAAGGAGTACCTGGTCTTCTGCCCCAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010477:ENSBTAT00000048382:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(35.4=69.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAACACCAGCTGGAATTCCT
R:
GGCAGAAGACCAGGTACTCCT
Band lengths:
248-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]