MmuINT0167022 @ mm10
Intron Retention
Gene
ENSMUSG00000032514 | Ttc21a
Description
tetratricopeptide repeat domain 21A [Source:MGI Symbol;Acc:MGI:1921302]
Coordinates
chr9:119950601-119951020:+
Coord C1 exon
chr9:119950601-119950698
Coord A exon
chr9:119950699-119950819
Coord C2 exon
chr9:119950820-119951020
Length
121 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAGA
5' ss Score
5.24
3' ss Seq
CCCAAGCCTCTCTCGCACAGTTG
3' ss Score
4.58
Exon sequences
Seq C1 exon
GGAGCATCTGGTGCCAGATCCTACAGGGCCAGCTGGAGGAGGCTGCTCACCAGCTGGAGTTCCTCAAGGAGGTGCAGCAGTCCCTTGGGAAGTCTGAG
Seq A exon
GTCAGAGCTAATGGGCAAGGATGGCTGGGAGGGGGGTCTCCAGCAGAGGGCCATCAAAGTGGCCCACCTTACTGCTCGGGGCCAGCCTCAGCTCGCCTGAGCCCAAGCCTCTCTCGCACAG
Seq C2 exon
TTGCTGGTTTTCCTGCAAGCCCTCGTAGCAGCTAAGAAGCAAAGGCTGGAGCAGGAGGCCACGGCGCTCCTGAAGGAGGCGGTGGAAGTGCACTTCTCCAGCATGCAGGGTCTGGCCCTGAGCCCCGAGTACTTTGAAAAGCTGGACCCCCTCTTTCTGGTCTGCATCGCCAAGGAGTATCTGCATTTCTGCCCCAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032514:ENSMUST00000035100:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGTGCCAGATCCTACAGG
R:
AGAAAGAGGGGGTCCAGCTTT
Band lengths:
250-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types