BtaINT0154282 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010477 | TTC21A
Description
tetratricopeptide repeat domain 21A [Source:HGNC Symbol;Acc:HGNC:30761]
Coordinates
chr22:12505389-12506744:+
Coord C1 exon
chr22:12505389-12505604
Coord A exon
chr22:12505605-12506505
Coord C2 exon
chr22:12506506-12506744
Length
901 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
3' ss Seq
GTTGGGTTTCCTTGTCTTAGCAC
3' ss Score
4.68
Exon sequences
Seq C1 exon
GTCCGAGACCACCCCCTTTACCACTTCATCAAGGCCAAGGCCCTCAACAAGTCTGGGGACTATCCAGAAGCCATAAAGGCACTGAAGATGATCATAAAATTACCAACTCTGAGGACGGAAGAGAACAAGAAGTTCCGTGGGCCCTGCGTGCGCCCCAGCGAGCGGGTGTCCATCTTACTGGAGCTGGCAGATGCCCTCCGGATGAACGGAGAGCTG
Seq A exon
GTGAGAAACGCCCTGCTCTGTTCTCTTGCTGCTGGCGCGTGCTGGAGGGCCAGGGTAGACCTGGGAACCAGGCTCTTTGATTCTGGCTGGTGTTTCCTTGCACTTTAGTTTAGCTTTTATTCATTTGGGAGTATCCCTCTCCCCTACTTTAAAGGCTTCAGTGGCTCCCACACCCTTAAGATAAACTCCAAACCCTCCTGAGTCCTGCACGATCTGTCCCCTGCCGACCTCACTGTCCCCAGAAGGTTGTCAGGGAGGCAGAGCACAAGGCCCACCAGAGCCACCACACGTGGTCGTGCAGTTGGGCAGTGCACCTCTCCAGTGGATGCCGCTTACATCCCCTTGGAGTTTTGCAGTGTGCAACCTGCTCAACTGTATGGGGCGGCCCTGGGACCTTGGAAGGTCTGGCTGGGCAAAGGCACAAAGAACCAAAATGGGCAAAGAAAGTAACTTTGTTGGAATAATTGAGAGTACAAATGCAATGAAGATACAATTCAAATATACCTTTATGTGCCCAATTCCATGGATAGAGGAGCCTGGCAGGCTACAGACCATGGGGTCACAAAGAGTCGGACGCAACTGAGTGGCTAACACTAACTAACCATAACATAAAAATACCTTTGACTGAAAGCAGGAAGGTATAGGAGATGCGTCCATAGGTCTCTCGTAGGAAGAAATCACATTCAGACTTTGAGGCACTCAGGGACAAGTTCTCACAGTCAGGGATTTCATGTCCCCCAGCTGGCCCTGCCCTCCAGGAACAGTGGGCCTCAACCCCGAGAGGCTCGCTCTCCCTGTCCCCTTCCTGCTGCTCTAAAGTGGGGATGGGCCATCCTCTCCCTGGCTTCCAGGTGTGGTGGGTGACAGCAAATGGAGGGTCTGTTGGGTTTCCTTGTCTTAG
Seq C2 exon
CACGAGGCCACCAAGGTCATGCAGGACGCCATCAACGAGTTCAGCGGCACGCCGGAGGAGATGCGCGTCACCATCGCCAATGTGGACTTGGCCCTGAGCAAGGGCAGCGTGGACCTGGCGCTGAGCGTGCTGCAGAGCATCACGCCCAGGCAGCCCTGCTACACGGAGGCCAAGGAGAAGATGGCCAGCATCTACCTGCAGACCCGCAAGGATGCCCGCCTCTATATCGGGTGCTACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010477:ENSBTAT00000048382:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=NA C2=0.025
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PU(82.1=95.8)
A:
NA
C2:
PF134141=TPR_11=PD(15.5=16.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAACTCTGAGGACGGAAGA
R:
TAGCACCCGATATAGAGGCGG
Band lengths:
351-1252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]