DreINT0021852 @ danRer10
Intron Retention
Gene
ENSDARG00000102541 | TTC21A
Description
tetratricopeptide repeat domain 21A [Source:HGNC Symbol;Acc:HGNC:30761]
Coordinates
chr24:41150237-41151022:-
Coord C1 exon
chr24:41150810-41151022
Coord A exon
chr24:41150476-41150809
Coord C2 exon
chr24:41150237-41150475
Length
334 bp
Sequences
Splice sites
5' ss Seq
CAGGTGATG
5' ss Score
5.99
3' ss Seq
AAAGCTTTGTGTTTCTCCAGCAT
3' ss Score
6.15
Exon sequences
Seq C1 exon
ATTCGAGATCAGTTCCAGTTTAACCTGATTAAAGCTCAAGCTCTGCTGAGGTCTGGAGATGTGAAGAGCGCCATCCAGTGTCTGAACCTCATCATGAAGATGCCGGGATTCCAGGGGCCCTCAGAGGGGCCGCAGTCCTCCATCATCTCCAGCAGTGAGCGATTGTGTGTGTTTCTGCAGCTCAGCGAAGCTCTCAGGCTCAATGGAGATCAG
Seq A exon
GTGATGTGTGTGTTTATCATCTATCGCAGTGTTTCTCAACCATGTTCCTGGAGGACCACCAGTTCCACGTTTTGGATGTCTTCTTTGCCTGTCACACCCATTACAGGTCTTTCAGTCTCTACTAATGAGCCGATGATCTGAATCAGGTGTGTTTGGTTAAGGAGACATGGAAAATGTGCAGAGCTGGTGCTCCTCCAGGAACATGGTTGAGAAACACTGATCTATAGTACTGTATTTAGTTATTCAACATACATTTGATATTGAAGTATATTTTTTTCAATATCATGCAACCCTAAATTGAGCCAGACTGAGGAAAAGCTTTGTGTTTCTCCAG
Seq C2 exon
CATGAAGCCGCTAAGGTTCTTGAGGATGCGGTTGTGTTCTTCAGAGGGACGCCGGAGGAGACGCAGCTCACACTCGCTCATGTGGATCTGGCTTTAACGAGAGATGATGTAGACGCCGCTGTACTTATCCTGCAAAACATTCTGCCTACCGAGTCCTCTTACATCCAGGCCCGAGAGAAGATGGCTCATATTTATCTGGAGAGGAGAAACGATAAGAAACTTTTCATTGCCTGTTACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102541:ENSDART00000159738:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.047 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGGAGATGTGAAGAGCGC
R:
CTTCTCTCGGGCCTGGATGTA
Band lengths:
343-677
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]