RnoINT0157544 @ rn6
Intron Retention
Gene
ENSRNOG00000034089 | Ttc21a
Description
tetratricopeptide repeat domain 21A [Source:RGD Symbol;Acc:1308806]
Coordinates
chr8:128643025-128645727:+
Coord C1 exon
chr8:128643025-128643240
Coord A exon
chr8:128643241-128645488
Coord C2 exon
chr8:128645489-128645727
Length
2248 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
3' ss Seq
TGGTCCCCCACACGTTGTAGCAC
3' ss Score
4.08
Exon sequences
Seq C1 exon
GTCCGAGACCACCCCCTCTACCACTTCATCAAAGCCAGGGCCCTCAACAAGACTGGCGACTACGCCGAGGCCATAAAGACCTTAAAAATGATCATAAAGGTGCCCACCTCAAAGGCAGAAGAGGGCAGGAAGTCCCGAGGCCCCTCCGTGCGGCCCAGCGAGCGGGCATCCATCCTGCTGGAGCTAGTAGAGGCCCTCCGACTGAATGGGGAACTG
Seq A exon
GTAAGAAACGCCGGTGCTTGGGGCCAGGGATTGGGCTCAGTGGACAAAGAGCTGGCTGTGAAGGCCTGAGGACCAGAGTTCACACTGCCAGCACCCACAATTCATCAAAAGAAAGTTTTAAGCTCAGGGAGAGACCTGCCTCAGGAAGTAGAGTGGGGAACAATTGAAGGAGACAGTTCTGTCAGGCTCTGCCCTCCTCATGCAGATGTGAATGAGCAGGGTGAGCACGCTCATGCCTTCACCCCTCAGTGGGGCTGTGCACGTATGCACACCACATACAGAGACACACAGCAAAGAAGGAAAGCTCCCCTGGAGCACAGTAGAGGCCCCAGGAGATCAGCCTTGGGGCCAAGTTCTAACTGTGCCTGATGTTACTTGGGCTAAGATTTGAGCCCTTTCTGTTGGTTTGGTTTGGTTTGGTTTGGTTTGGTTTGGTTTGGTTTGGTTTGGTTTGGTTGAGACAGGGTCTCACTATGTGTGATAGGCTGGCCTGGAACTCACCATGTAGACCAAGCTGGCCTCGAACTCACAGAGATCCCCCTGCCTTGGCAAGAAGCAAGAGCAAGACTCGTAGAGGCTGGTGTCTGCATGATGCCCAGGCCTCAGTAGCCTTCCCAACGCACAGGCTGTGGTCTGTCTTGTTTCCATCTGTGGCCAGGGTCTGTAGTCTCCCCTGTGATGAGCCTGACGAGACAGGAAGATAGGAAACTAGCCTGCAAAAAGCCGCTGCTCACTCTCTAGATACAGGGACTGTGAGGGTGCCTCAGCTGGCAGAGTGCTTCCCACACAAGCATGAGGACATAGGTTTGATCCCTGAGAAAAGGAGTGGGGCCAGCATGGAGGTTAGCTTGTCTACATAGTGAGTTTCAGGCCAGCCAGGGCTACATAAGGAGACAGTGTATATATATGTGTGTGTATGTGTGTGTACACATATATATATACACACATGTATATATATACGTATTTTATTGTGTATATTGTACATATGTGCATATATGTATGTGTATATTATTTATATTTTATTATTTTATTTATATATATATAATTTTGTTGTTTTAGCATATATATACATATATATATATATATATGTATATATATATATATATGAGATGACTCAGTGGTTAAGAGCACTGGCTACTCTTACAGAGGATCTGGTTTCAGTTCTTAACACCGTCATGGTGGTTCACAACTATCTGTAACTCCACTTCCAGAGGGTCTAATTTCCTCTTCTGGCCTCTAAAGGCACAAGGCATGTATGCACACACACATATATACAGAGGTCGGTGGGGGGAAGGAGGGGAGGGGAGATGGAGCAGGACTGGGAGAGGGAGGGAGGAGAGAAGAGAGAGAGGAGGTACTCACACACATGGAATAAAAATAAATATTTACTTCTTTTTCTGTTTTTGATTTTTTGAGACAAAATTTCTCTGCGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCCTCGAGCCTTGAACTCACAGAAACCTGCTTGCCTCTGTCTCCCAAGTACTGGGATTAAAGGCATGTGCCACCAGCACCCAGCGCAAGGCCCTGAGTTTGGTCCTCAGCTCCGGGGGATGATTTGGGGGGGGGGGGTTGGGTTTGGACAGTATTTGATTGTTCAACTTGGTTTTTGTTTGGTTTTTGCTTTTCTAACTTTGAAGATTTACCATTAGTTTATTATTGCGTGTGTACACGTGTACACATGCTGTTATACATGTGTCACAGCGAGATCAGAGGACAAATTGTGGGAGTTGCCTCCCTCCCTCTGCCATATTAGTCCTGGGGATTGAACTCACATTACCAGCTTTAGCAGCAGACGCCTTAACCCCCTGATCCCTTTCATCACCCCTTGGTTTGTTTGTTTGTTTGTTTGTTTTTAAACTTTGTAGTCCAGATTGGCATGAAATTACGGTCCTCCTGCCTCAACCTCACAAGTGTTAGGATTGCAGGTGTCCATCACCATGACTGGCCTCCCAGCTAAGCTCCTGGGGAAAGGGTCGGGTCGGGTGAGCTGTCCCCATTAAAGGAGACACAATGAGGAGAACAGAATCTGTAGGTCCTAAGGAATAATCCTCGCCTCTGCGGCTGCCCTGCAGATGGTCGAGAGCCAGACTGGCTCAGAAACACCAGGCCACGAGCTGAACCCAGGGGTGGGGATGTGGCATAAATCTCCTTGGGTCACCTGTAATAGTTAATACCGAAGAGAGGGTCTGTCTGGTCCCCCACACGTTGTAG
Seq C2 exon
CACGAGGCCACTAAGATCATGCAGGATGCCATCAACGAGTTCAGTGGCACACCAGAGGAGATGCGCATCACGGTCGCCAACGTGGACCTGGCCCTGAGCAAGGGCAACGCAGACCTGGCACTGAACATGCTAAGAGGCATCACGCCCAAGCAACCCTGCTACACAGAAGCCAAGGAGAAGATGGCCAGCATCTACCTGCACACTCGCAAGGACGTGCGCCTCTACATCGGCTGCTACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034089:ENSRNOT00000043831:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF128952=Apc3=PD(34.9=41.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]