BtaINT0154283 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010477 | TTC21A
Description
tetratricopeptide repeat domain 21A [Source:HGNC Symbol;Acc:HGNC:30761]
Coordinates
chr22:12506506-12507742:+
Coord C1 exon
chr22:12506506-12506744
Coord A exon
chr22:12506745-12507669
Coord C2 exon
chr22:12507670-12507742
Length
925 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGC
5' ss Score
8.69
3' ss Seq
GGTTTTGGTTACTTTTGCAGGGA
3' ss Score
7.2
Exon sequences
Seq C1 exon
CACGAGGCCACCAAGGTCATGCAGGACGCCATCAACGAGTTCAGCGGCACGCCGGAGGAGATGCGCGTCACCATCGCCAATGTGGACTTGGCCCTGAGCAAGGGCAGCGTGGACCTGGCGCTGAGCGTGCTGCAGAGCATCACGCCCAGGCAGCCCTGCTACACGGAGGCCAAGGAGAAGATGGCCAGCATCTACCTGCAGACCCGCAAGGATGCCCGCCTCTATATCGGGTGCTACCG
Seq A exon
GTGAGCCCCGGGCGGCGCACTGACCGGCCCGGTCCCAGTCGCGTGTCAGGAGTGTTTTCTCCAGATCGTCTTCTTTGCCCCGGGGCTTCAGAACGTGTTCTCAGAGTGTGTTTGACAATAGAAGGGAATTTCCCCTGGTGAGAATCTGAGTGTGATAGGTCGGTCAGTCAGGCCAACCTGCTGCTGAGTTGTAAGGACACAGGAGTGAATCTTCCCTGAGTTCTGCTTGCCCCTCATTATGGTTCATATCCTGGTGGGAACCATGGTTCCGGCGTGGCCTGTCCTTGGGGAAGTGTTCAGGGGCTTGGATGTAACCGATGTGAGTGAAGGAGGATGGAGAGCCGGGATTGGGAGCCCTCGGCAATTTTCTCTACAATTTGACGTTGGGCCCTCAAGTGTACCTTTCTTGTCCCCTTCCTCAGGCAAAACTCGATCTAGGCAATTCGGGAGGAAGGGGAGGTGATGCCACGAGCAATGGGAAACCAATAAATAGTGAGATGACATGGTCTCATTGAAGGTTTAGAAAAAGTAGGCTGGGACTTCCTGGTGGTTCAGTGGTAAAGACTCAGTGCTTCCAATGCAGGGGCTTGGGTTCAATCCCTGGTCAGGGAACTAAGATCCCACATGCCACGTGAGGCTTGGCTGGGGAAAAAAAAAAGAAAGAGGCTGCCTCATGAAGAAGGTTCTAGGCGTTTGGGGTGGAGGCCAGAGGAGGGGGTGGAAGTCCCGGCCATGATCCAGATAACAGATGAGGAGAGCCTGAACTAAGGGAGCTAGCACTGCGTCCCATCTGAGCCGAGAAACACTGGGTGATGAATAAATGAGTGAGTGCACGGGTGGCAGACAGAATGAGTGAGGAGAAGAGACGGATCCAGGAATAGGAAGGACGCACAGGGCTGAGCTAAGGTTTTGGTTACTTTTGCAG
Seq C2 exon
GGAGCTCTGTGAACATCTGCCTGGCCCCCACACCAGTCTGCTTCTGGGTGATGCTTTCATGAACATTCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010477:ENSBTAT00000048382:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.025 A=NA C2=0.040
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(15.5=16.2)
A:
NA
C2:
PF134141=TPR_11=PU(24.6=56.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGAGGCCACCAAGGTC
R:
CCTGAATGTTCATGAAAGCATCACC
Band lengths:
310-1235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]