DreINT0021853 @ danRer10
Intron Retention
Gene
ENSDARG00000102541 | TTC21A
Description
tetratricopeptide repeat domain 21A [Source:HGNC Symbol;Acc:HGNC:30761]
Coordinates
chr24:41147795-41150475:-
Coord C1 exon
chr24:41150237-41150475
Coord A exon
chr24:41147868-41150236
Coord C2 exon
chr24:41147795-41147867
Length
2369 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGA
5' ss Score
5.26
3' ss Seq
TAATCATAAATCTGTTTCAGAGA
3' ss Score
5.93
Exon sequences
Seq C1 exon
CATGAAGCCGCTAAGGTTCTTGAGGATGCGGTTGTGTTCTTCAGAGGGACGCCGGAGGAGACGCAGCTCACACTCGCTCATGTGGATCTGGCTTTAACGAGAGATGATGTAGACGCCGCTGTACTTATCCTGCAAAACATTCTGCCTACCGAGTCCTCTTACATCCAGGCCCGAGAGAAGATGGCTCATATTTATCTGGAGAGGAGAAACGATAAGAAACTTTTCATTGCCTGTTACAA
Seq A exon
GTGAGAGCTCTATTACCATCATTACACATGAAATCAAAACTAACCATATTGACTTTGTTTGCTCACATTGCTAGTTTTGTGGTGAACAATTCATCTGTGCATGTCGTTACGAACAAACTAAATGGCTTGCCCTTGTAATCTTTAATTACAATCTGCAAATGCACTTCCTGATTGTTTTCAGTTCAATTCTTAGATTAGGCATTAGGTGTGGCTAACATACTTAACCACGCCCCCCTTTAACTGTCGCTATGACATCAAACAGAAATAGTGAGGACGAGCAGTCTGTTAAGTTTTAATAACTCTCCCCAAACCCGTTTCCCCATCTTTCTGAATGAAACGCCCACTTTACTACATCCAATCAGCTTGCAGTAAAAAAACAAGCCACGCCCACTACTTCCTCATTAAATATTGTTTCTCTGCATCACAATTAAAAAAAATGGTTGCATCTTTCAGATCATGCTGAGTTTAATGACAGACAAGGCATAGACCAGGTCCTGATTGGATTATGTTAATTAAAGGTGGAATATAGATGTTGAACTGATGTCTACATAGTAGGTATATGACTTTGGTGAGTTAAAAAATCTCCAGAAAGTGTTTTATGTGCTCATTTATTATGCCATAAACCAGAATCATTCTATATTGACCATGTTTGGATCGTTTGCGAATATTAATGAGCTCAGCTGTGAAAAGAGGAGCCCAGAAATAAAGCTCCTCCCCCTACTCAGTATTCAAATTCAGATGTAAATAAGTCATCATGTTGAAATAAATGTCTGCAGCAACTTTCAGTTCCCTCTCACATTAATAGGAATTAAATATTACAATACTGTGCATCCTGAAAGTATTCATAGCCTTATTCCAAAATGGATTAAATTGATTAATTTCCTCAACATTCTACACACAATCCCCCATAATGACAATGTGAGGAAAGAGTTTTTGAAAGTGTTGCAAATTTATTAAAAATAAAAAGCTGAGGAATCACATGTACATCAGTATTCACAGCGTTTGGCGTGAAGCTCTACATTGAGCTCAGGTTCATTCTGTCTCCACTGATCATTCTGGAGATGTTTCAGCAGCTTTATTGGAGTTCACCTGTGCTCAATTCAGCTGATTGGACATGATGTGAAAGGGCTACACCTGTCTATATAAGGTCCCAGGGTTGACAGTGCATGTCAAAGCACAAACCAAGTATGAAGGCAAAGGAATTGTCTGTAGACCTCCGAGACCGGATTGCCTGGAGGCAAAAGGCTGGGGAAGGTTACAGAAACATTCTGCTGTTCTGAAAGTTCCAATGAGCACAGCGGCCTCCATCATCCGTAAGTGGAAGATGTTTAACCACCAGGAGCCTTCCTAGAGCTGGCCGGCCATCTAAGCTGAGTGATCGAGGGAGAAGGGCTTTAGTCAGGGAGGTGATCAATAACCCGATGGTCACTCTGTCTGAGCTCCAGCGTTCTTCTGTGGAGAGAGCAGAACCTTATAGAAGGACAACCATCTGTGCAGCAATCCACCAATCTGGATTGTATGGTAGAGTGGCCAGACGAAAGACACTCCTGGAATTTGCCCAAAGGCATCTGCAGGACTCTCAGAGCATCAGAAACTAAACTCTCTGCTCTGATGAGACTCAAACTGAACTGTTTGGAGTGAACGCCAGGCGTTACGTTTGGAGAACAGCAGGCAGCGCTCATCACCAGGCTAACAGCATCCCTACAGTGAAGCATGTTGGTGTTGGCATCATGCTGTGGGGATGTGTTTCAGCAGCAGGAACTGGAAGACTAGTCAGGATAGAGGGAAAGATGAATGCAGCGATGTACAGAGACATCCTGAATGAAGACCTGCACAAGAGTGCTCTTGACCTCAGACTGGCATCATCTTCCAGCAGGACAATGACCCAAAGCACACAACCAAAATATCAATGAAGTGACTTCACAACAACTCGTTGAATGTGCTTGAGTGGCCCAGCCAGAGCCCAGACCTAAATTCTATTGAACATCTCTGGAGAGATCTGAAAATGGCTGCACACCGTCGCTTCCCATCCAACCTGATAGAGCTTAAGATGTACTGCAAAGAGAAATGGGCCAAAATTCCCAAAGACAGGTGTGCCAAGCTTGTGGCATCATATTCAAGAAGACTTGAGGCTGTAATCACTGCCAAAGCTGCATCAACAGTATTGAGCAAACGCTGTGAATACTGATGTACATCTGTTTTTTTTTTTATACATTTGTAAGGTATTAGGTATTGTGTGTAGAATGTTGAGGAAATAAATGAATTTAGTCCATTTTGTATTAAGGCTGTAACATAAATGTGAAATATAAAGCGCTATCAATACTTTCCAGATGGACTGTATACTGTATATAATCATAAATCTGTTTCAG
Seq C2 exon
AGAAATAACTGAGCAGCTTCCAGGAGCTCATACTAGCATCTTACTGGCTGATGCCTTCATGAAGATACACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102541:ENSDART00000159738:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]