RnoINT0157545 @ rn6
Intron Retention
Gene
ENSRNOG00000034089 | Ttc21a
Description
tetratricopeptide repeat domain 21A [Source:RGD Symbol;Acc:1308806]
Coordinates
chr8:128645489-128646759:+
Coord C1 exon
chr8:128645489-128645727
Coord A exon
chr8:128645728-128646686
Coord C2 exon
chr8:128646687-128646759
Length
959 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGT
5' ss Score
8.31
3' ss Seq
GCAGTTGATTTCTCCTGCAGGGA
3' ss Score
7.95
Exon sequences
Seq C1 exon
CACGAGGCCACTAAGATCATGCAGGATGCCATCAACGAGTTCAGTGGCACACCAGAGGAGATGCGCATCACGGTCGCCAACGTGGACCTGGCCCTGAGCAAGGGCAACGCAGACCTGGCACTGAACATGCTAAGAGGCATCACGCCCAAGCAACCCTGCTACACAGAAGCCAAGGAGAAGATGGCCAGCATCTACCTGCACACTCGCAAGGACGTGCGCCTCTACATCGGCTGCTACAT
Seq A exon
GTAAGTTCTGCCTACAGCAGGCGGCACCTCTCCCCATCCCCCCAACCCCCCACCCTGGCTGCCAGGGTTCCCTCAGGTCGCATACCTTCCACTGGGTCTCCCTCCAGAGTGTAGCCCCGGACTGCATTAGACCAAGGTATGAGCACCTCGTAGGTCTCCCTGCCTGTGGCTGTGGGTGAGTTCTGAGGACCTGCTGCCAGCCCCTCCCCTGCGTCTCTGCCCTGTATGGCTTACATTCAGCGAGAAGATCTAGGCCTGGACCCCAGCACTCGTGCAAAGACATCACAAGAACACATTCACACTTTGGCCCCTCACGCTGCCTTGAAGAGCCATGGTGCAGGGCCTTGGGGATGACCAGTGTGGGCTGGGTGAGGAAAGAGTGGAGTGCAAGGTGGCGGCCCCAACCCTCTGTCTCCCAGGAGCTGGTGTTGTGACCTCAGGGGGCCTTCCCAGCCTCTTCCTCTGATAAAAGCTAGTTGGAGGTTGGAGAACTGGGAGTGTGGAGACTGAGTCATAGCGCACCATGTTAGTGGACATCCATGGGAGCAGTGTGGGCCTGGGGTGGGGGTCTGTGGCTGCTCGCTTGCCAGACGTGTACTGGCTTCCATCTTCTCGCCTCAGGAAAAGGGTGAGCATTGGGGGGTGAGGCTCGGTTATGGGTTCTTTCATACCACGCACGAAGCCCTGTGCTCTGTCTTCAGTGTGACACAAAGCCAGGTTGGGCAGGCCACGACTGTAATCCCACACTTGGATCCTGCCTGTCTTAAAATCCAACCAAACCCAAACAAAGAAACATGGAAAGCAGTGTGGCTCATGGAGAAGGGCTGGAGGGCTGGGGTGGCCCCCAGCCATGGCTAAGAGACTCTCAGGGCTCCCGGGGATCTCCATGACTCAAGAATGGTGAACGGTGCCCATTAGGCAAGCCCAGACCTGAGAACCGCAGTTGATTTCTCCTGCAG
Seq C2 exon
GGAGCTTTGTGAACATCTGCCCGGCCCCCACAGCAGCCTGCTACTGGGTGACGCTTTCATGAACATCCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034089:ENSRNOT00000043831:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134141=TPR_11=PU(21.5=56.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAGGCCACTAAGATCATGC
R:
TCCTGGATGTTCATGAAAGCGT
Band lengths:
310-1269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]