BtaINT0154296 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010477 | TTC21A
Description
tetratricopeptide repeat domain 21A [Source:HGNC Symbol;Acc:HGNC:30761]
Coordinates
chr22:12514965-12515211:+
Coord C1 exon
chr22:12514965-12515032
Coord A exon
chr22:12515033-12515133
Coord C2 exon
chr22:12515134-12515211
Length
101 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGC
5' ss Score
6.16
3' ss Seq
CCTTTCTTTCTCTGTCCCAGGTC
3' ss Score
12.15
Exon sequences
Seq C1 exon
GCTTCAGGCTCGCTTTCAACTACTTGAAAGACAAGAGATTCGTGGAAGCCATTGAAGTCTGCCATGAT
Seq A exon
GTAAGCTCCTGACAGTGGTGGGATGGGGCGGGGGGTGGGGGGTTGGTGCAGTGGCACGGGGCCCTGTCTGGTGTCTCATACCCTTTCTTTCTCTGTCCCAG
Seq C2 exon
GTCCTCAGGGAGCACCCCAACTACCCTAAAATCAGAGAAGAAATTCTGGAAAAGGCCCAAGGGTCTCTGAGGCCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010477:ENSBTAT00000048382:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCAGGCTCGCTTTCAACT
R:
CTAGGGCCTCAGAGACCCTTG
Band lengths:
146-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]