RnoINT0157559 @ rn6
Intron Retention
Gene
ENSRNOG00000034089 | Ttc21a
Description
tetratricopeptide repeat domain 21A [Source:RGD Symbol;Acc:1308806]
Coordinates
chr8:128655859-128657955:+
Coord C1 exon
chr8:128655859-128655926
Coord A exon
chr8:128655927-128656007
Coord C2 exon
chr8:128656008-128657955
Length
81 bp
Sequences
Splice sites
5' ss Seq
AGCGTAAGT
5' ss Score
10.07
3' ss Seq
CTGATCCTTCTCTGTACCAGGTC
3' ss Score
9.67
Exon sequences
Seq C1 exon
GTTTCAAACTGGCTTTCAACTACCTGAAAGACAAGAAGTTCGTAGATGCCATTGAAGTCTGTCACAGC
Seq A exon
GTAAGTCACCAGTACAGGTAGGGAGGGTGCTGCGGTGGGCCCCCTGCCTGATTCCACACTTCTGATCCTTCTCTGTACCAG
Seq C2 exon
GTCCTGACGGAGTACCCCAACTACCCCAAGATCAGGGAGGAGATTTTGGAGAAAGCCCAAGGGTCCTTGAGGCCCTAGCTGTGGCTGCAAGGGGCTCCGGACAGTAGAAGCATCAGTCTATGGACGATTCATGGGGAGAGTAGGAAGTGAATCAGTGGAGAAGCAAGTGAGAAATGCATACTCTCTCCATTTCCGTATCGCTTGTGCTTCATTTGGATTCATGCCTCCTGGGGCCCGAGAGCGTCTGGAAGCTTTATGCTTTTTTAAGGCCTAAGAAGTAATTTTGCCTGGAGAAGGAAGACAGCTGGCTTAGCCTGTGCCGGGGATTCCTGGGCCTTACTCAAGGACCCCACATTTGCTCCGGACTCTTGAAGACATGGACCAGAGACCCCGCCCAGCAGAGTGATGGCTAGGAAAGTACCCTATAGCTACTTCGAAGTGCACCCCTCCCCCAGTCTTGTCCCCAGCGTCTCAGAACTAGAGAAGCATGGCCCCTCCTTGCCACGTTGCCCACCAGGTCTGCCCAGCACAGCAGTGGGCTCAGACGGGAGGACCAGCTGTGGAAGGACCCCAGAGCTAGGGCCCTGTGTAAGAGGGAGCAGATTTTCAAGGCCCATTCACTGCGCTTCTCTGTCACCACATTCTGTTCCTATGCACCTCCCCCAAGCTAGACCACACCCATTTGGGACAAGCCAGATTACCACGGAGCCCCATCCTCCCCCTACATGCAACCACACTTTGGCTTTTGTAAAAGATATTAGCCAACCAGCTCACCTTCCTGGATCCCACTTAATGCCTAGGGGGGCAGACACAGTGGCTACTGTTTCTCAGAATGGCATTATGGGGTCATCCCAGCCTCAGGGGAAGGAACTCTGAACTCTGAACTGGGTATCTGGAGGCCTGAGTTCTCAACATGTGCTCTTCCCAAGTGCTTGCCCTCTCTGGGTCTCAGTGCCCTACTCTTCAGCAAGCAATTAGACTAGACCTGGGCAGGGTGTGCTCACTCAGTGGTGCACGTGCCTAGCATGCACAAAGCCCTGGGTTCAACCCCCAGCACACCTGGAACCCCGGCATATTGGAGGTGTAAGCAGTAAAGTCATCAGGTCAGAGTCATCTAACTTAAGTGTCTGAGGTAGTCTTGGGGTACACCAGACCATGTCTCAAAAGAAAAAAAAAGACTCCATTTCCCAAATCATTGTATCATGCTTTGCCAGTAATGTCTAGAAAATGTTTTATTTATGGCCCTGGGGTTGAAATGAAGAGTACATTTTATACCCCTAAACTACAGGTTTCACCCCCTTTAAATTGAACAACTCTGTGCTTGTCCATGTTCGTGTAATAGCTAGCACAACATATTTAGGAATTCTTAGGCCCTGTTCTCTCACCTTTAAGGCTACTGATATACTCTATTTAAAGAAAACAACAGGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTAAGTTCAATTCCCAGCAACCACATGGTGATTCACAACCAGCTGTAATGGGATCCAATACCCTCTTCTGGTGTATCTGAAGACAGCTACAGTGTACTCATATACAATAAATAAATCTTAAAAAAAATAAAGAAAACTACAGGCAGGCATGGTATAGTCCTACAGCTACAATCCCAGCATTTTGGGGGCACAGGGAGGGCCTGAAGCCCAGCCTGACTTGTACAGTGAGTTCCAGGCCATCCAGGGCTAGCTCTGTAGCCAGATGCAGTCTCAAAGCAAAGAAGGGGTGAGGAGCTCAGATAAAGGCTCCTGTCTCAACCCTAATGGCCTGAGTTCTGTCCCTGGGTCCCACATGGTGGAAGGAGAGAACCAACTCCTGCAAGTCACCCTCTGACCTCCACACAGGAACGGTAGCATTGTGTAAACTCACGTGGATACACAAAATAAAAGTGTAACGATGACCGAATTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034089:ENSRNOT00000043831:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCATTGAAGTCTGTCACAGC
R:
TCCTACTCTCCCCATGAATCGT
Band lengths:
167-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]