BtaINT0154314 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016512 | TTC21B
Description
Bos taurus tetratricopeptide repeat domain 21B (TTC21B), mRNA. [Source:RefSeq mRNA;Acc:NM_001102108]
Coordinates
chr2:30481329-30483034:+
Coord C1 exon
chr2:30481329-30481435
Coord A exon
chr2:30481436-30482845
Coord C2 exon
chr2:30482846-30483034
Length
1410 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TTATCCTTACATTTTACTAGGCT
3' ss Score
6.86
Exon sequences
Seq C1 exon
TAAATGAACTGTCGGCCCTCATGGAGGATGGACGTTTTCAAGTTCTTCTAGCAAAAGTTTACAGTAAAGTGGACAGACCTGATGATGCAGTCACTTCATTGCAACAG
Seq A exon
GTAAGGAAAATACCTTCGTTTGTGAAGGAATGAGGGTGGGTGGCGGTCTCAGAAGGAAATATACCACATACAAAAAAAAAAAGACAGTCTTTAGGTCCAGCTGTTCTGGAAGATAAGTCAAATAGAAATAACATTTGAATGCCAGTGGATTGTACTGTCTAAAAATATCATTGCTAATTATTATATAACAATTAGGGAAGGTTGATATTTTTAAGGTTGATATTTTTAATCCTGTTTTACAACTGAAGAAGCTTGGTTTAATAACTTGTAAGAACTCACTCAATTAGTGTCATAGGCAGGAGTTAAACTCACTTTTCTTCTTCTGTTTACTTCTTGCATTTATTTATATCTTCTTTAGTTTCCCTTAATATTTTGTGGTTTTTCAATGTAGAGGTTTTGTACATGTTTCCTTAGATGTATTCCTAAATATAAGTGGCTGATGTGTTTTGATGATTTCTTAATTTCTAGTTTGTTAACAGTATTTTTAGTACATGACTTAAATTTTATCTAATGTACTTTCTGCATCTGTCAAGATGGTCCTGTGACTTTTTTCCAATTTTTTTTTCCTGTGGTATATTAAATTGATTGATTTTCAGATGTTAAACCATCCTTATGTTCCTGAAATAAATGACACTTTGTGATTTTTTTAAAAAGATATTGCTGGAATTTAAAGATATTTCCCAATATTTTGTTCAATATATGTGCACATACATTCAAGAGAAAGACTGTTCTCTAAGACATGCTATTTCTTAATGTTTGGAACAATTCAGTATTAGCATCTTTGAGACCTTGAAGCTTCTTTGATGGTAGATTTTTATTAATGGATTTAAAATCTCTAGATTTCAGACTCATCATTTAAAAATTTTTTTCCTTCTAAGTGATGTCCTTAATACCTTCCCAAGAATGGAACAGCTAAGTTCAATAGCCTCAGTGATTTTAGAGGCTTAGCATGTTTTACAGGGGTGCTCCCTTCAGAAAGACTAGACTGATCTATATGCCACTGACAGTATGTGGATGTACTTACTCCCTGAAACCAGTCAATATTTGATTCAATAACTTTTAGGTACTATTTTATTAATGTAATAAACATTTACAATTTTTAATGATAGTATCTAGACATCTTTTCTAAATATTTGTTCCATGGTTGCATTTCCTCTTCAGAGAAAAGACTCTCTGCTTTTATAGTATTATACTTTTATAGTTTCAAAGATAATTGCATGGCTCATTTGCAAACAAGTACCTTTTGAAGACCTCAATTAAGACATTATCTTTGGATCAGGCTTTGTTAGATTGAAGACCAATCATGTTTAAATAAATCTGTAAAATTATGCTACATGTGAATGATTGAGAATTGTTTCATTTCTTTTCTACTTCTTTTTTTAATTGCTTTTTATCCTTACATTTTACTAG
Seq C2 exon
GCTCGAGAATTACAAGCTCGGGTGCTAAAACGTGTTCAGATCGAACAGCCAGATGCAGTTCCTGCACAGAAACATTTAGCAGCTGAAATTTGTGCAGAGATTGCAAAACATTCTGTTGCTCAGCGAAACTATGAAAAAGCAATTAAGTTTTATAGAGAAGCTCTTGTTCATTGTGAGACAGATAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016512:ENSBTAT00000005682:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134321=TPR_16=FE(49.3=100)
A:
NA
C2:
PF134321=TPR_16=PD(8.5=9.5),PF145591=TPR_19=PU(36.8=39.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGAACTGTCGGCCCTCATG
R:
TCTGTCTCACAATGAACAAGAGCT
Band lengths:
287-1697
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]