GgaINT0048250 @ galGal4
Intron Retention
Gene
ENSGALG00000010956 | TTC21B
Description
tetratricopeptide repeat domain 21B [Source:HGNC Symbol;Acc:HGNC:25660]
Coordinates
chr7:19173562-19175375:+
Coord C1 exon
chr7:19173562-19173668
Coord A exon
chr7:19173669-19175186
Coord C2 exon
chr7:19175187-19175375
Length
1518 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
TATTCTTCTCTCCACGCTAGGCT
3' ss Score
8.41
Exon sequences
Seq C1 exon
TTAATGAACTGTCTTCTCTGATGGAAGATGGACGTTACCAGGTTCTGTTAGCAAAAATTTACAGCAAAATGGAGAAGATTGATGAAGCTATCACTTCATTACAGCAG
Seq A exon
GTAAAGTGAAGACAAAAAGAAACCCTGTGAAAGCTTGTGACATCTTCATTTCTATTCCTTGTTTTGCTTTTATCCTGATTTTAAATCATAATAATTTTGTGAATAAGAAAAAAGCATACATGGTAGTAATAAGTGACCAGTGACTGGTGTGAAACGTTAAGTCTAAGCTTTTTTGAGCACTCATTGGAATTTAGATCAGGATTCTGCGTACTACTGGAAGGCCGCATTCATACTGTGTGTTCATTTGTGTGTGGAGCATAGTTTTAGCAGAGCAGTTGAAAACAAAGCCTATTACATATCCTTGCTGAGCACTGAGTACTGTTCATAGAACAAACAAGGATAGCTTTCAATGACATCATTTTTTTTGTAACCTTGACTGTATTATTTTTAAATAGCAACAGTAAAGTGTTAACTCTGGAGTTTAATATTATCATTCAGTGAGTCTTGAAAGAGCAAATTTGGAAGATACAGACAACATAATCCATTTAGAAGATGCTTCCTCAACACAAATCTTGAGTAAGAGATTGGATCCTTACATTCTTCTCTTCCATTACACCTCCAGTCTCAGCAGGACTAGCTGCTCACTCATGGTATTACCTTTTGATAAAAAGCTTTCTTCCCTTGTTTTTGCAGAGTGGCGTTAGGAATTCCCTGTGAATTTTACTGTGTTTGTTAGTTCTCCTTCCCCACTGGGCAAAATGGTAGGATGAAGAAGTGGTTCAGTACAGCTACAGCTTGCCAACTTCACTTGACAGTTTAGCACAGCTCTTCAACTTACTCATTTCCAAATGAGTGAAGCAGCTCTTTTAAGACTCCATTTCAGCTTGAGCAGAAGGAGGGAGTCCTTTATGTGGGAATTAGATAAAATTCAAGTTTAAATCAAAGCAAATCGATCAAGTATAATCAGAATTGGGCACAGCTATTTCCTTAGCTGTCTTTTTGTTCTTTTGGGGCATCAGCCTTTAACAGAGATCTCTAGCTCCATGGTTCTATATTCTCTTCATCGCTCCCTAAATGAAGAAGCTTAAAGTAAAATGTGGTACTTGTTTGCATTTTGGCTGAATTTTCTATACTTAATAAAGGAGTTAAGTATGTAGACTTTGAGTTTTAGCTTTTGAAGTTTTGTTTGTATGCTTAATTTTAGTCTATTTAAAGTCTATGAAATATAGACCTTACAGAATTAGATTGACATACAGTAGAGAAGCACGTTGGGATCCCATCTTCTTGAAGTGTTAAATGCAAGGTTGCTTTCCAGCGTGTTTTTAATGTGACTTTTGAACAGGGAAGGTAACTCGGGAGCTCAGAAAGGTGTTAGTGGTTTTTTGTTTTGCATTGGTTTTTTTGTTTTGTTTTGTATAGCAGAGAGTTTTCTGCCTTCTTTTTTTATTAGTTGAATATTTTAGTGTGCACGTACAAACTAGTAAAAATTGTAGCTCTGTTGTTGTAAAATGGACTATATAATATTGATTCCTTCAAAAAAAGCTGGCTGATTGATTCTTATTCTTCTCTCCACGCTAG
Seq C2 exon
GCTCGGGAATTACAAGCCAGAGTACTTAAACGGGCTCAGACAGAGCAGCCAGATGCAGTTCCTGCACAGAAACAGTTAGCAGCTGAAATTTGTGCTGAGATTGCAAAGCATTGTACAGTTCAGCGAAACTATGAAAAAGCAATTAAATTTTACAAAGAAGCACTTGTTCACTGTGAAACTGATAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010956:ENSGALT00000038446:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.013
Domain overlap (PFAM):
C1:
PF0051523=TPR_1=PU(76.7=63.9)
A:
NA
C2:
PF134241=TPR_12=PD(13.1=17.5),PF145591=TPR_19=PU(35.8=38.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGAACTGTCTTCTCTGATGGA
R:
CTTTTTATCAGTTTCACAGTGAACAA
Band lengths:
294-1812
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]