GgaINT0048250 @ galGal3
Intron Retention
Gene
ENSGALG00000010956 | TTC21B
Description
NA
Coordinates
chr7:21150321-21152134:+
Coord C1 exon
chr7:21150321-21150427
Coord A exon
chr7:21150428-21151945
Coord C2 exon
chr7:21151946-21152134
Length
1518 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
TATTCTTCTCTCCACGCTAGGCT
3' ss Score
8.41
Exon sequences
Seq C1 exon
TTAATGAACTGTCTTCTCTGATGGAAGATGGACGTTACCAGGTTCTGTTAGCAAAAATTTACAGCAAAATGGAGAAGATTGATGAAGCTATCACTTCATTACAGCAG
Seq A exon
GTAAAGTGAAGACAAAAAGAAACCCTGTGAAAGCTTGTGACATCTTCATTTCTATTCCTTGTTTTGCTTTTATCCTGATTTTAAATCATAATAATTTTGTGAATAAGAAAAAAGCATACATGGTAGTAATAAGTGACCAGTGACTGGTGTGAAACGTTAAGTCTAAGCTTTTTTGAGCACTCATTGGAATTTAGATCAGGATTCTGCGTACTACTGGAAGGCCGCATTCATACTGTGTGTTCATTTGTGTGTGGAGCATAGTTTTAGCAGAGCAGTTGAAAACAAAGCCTATTACATATCCTTGCTGAGCACTGAGTACTGTTCATAGAACAAACAAGGATAGCTTTCAATGACATCATTTTTTTTGTAACCTTGACTGTATTATTTTTAAATAGCAACAGTAAAGTGTTAACTCTGGAGTTTAATATTATCATTCAGTGAGTCTTGAAAGAGCAAATTTGGAAGATACAGACAACATAATCCATTTAGAAGATGCTTCCTCAACACAAATCTTGAGTAAGAGATTGGATCCTTACATTCTTCTCTTCCATTACACCTCCAGTCTCAGCAGGACTAGCTGCTCACTCATGGTATTACCTTTTGATAAAAAGCTTTCTTCCCTTGTTTTTGCAGAGTGGCGTTAGGAATTCCCTGTGAATTTTACTGTGTTTGTTAGTTCTCCTTCCCCACTGGGCAAAATGGTAGGATGAAGAAGTGGTTCAGTACAGCTACAGCTTGCCAACTTCACTTGACAGTTTAGCACAGCTCTTCAACTTACTCATTTCCAAATGAGTGAAGCAGCTCTTTTAAGACTCCATTTCAGCTTGAGCAGAAGGAGGGAGTCCTTTATGTGGGAATTAGATAAAATTCAAGTTTAAATCAAAGCAAATCGATCAAGTATAATCAGAATTGGGCACAGCTATTTCCTTAGCTGTCTTTTTGTTCTTTTGGGGCATCAGCCTTTAACAGAGATCTCTAGCTCCATGGTTCTATATTCTCTTCATCGCTCCCTAAATGAAGAAGCTTAAAGTAAAATGTGGTACTTGTTTGCATTTTGGCTGAATTTTCTATACTTAATAAAGGAGTTAAGTATGTAGACTTTGAGTTTTAGCTTTTGAAGTTTTGTTTGTATGCTTAATTTTAGTCTATTTAAAGTCTATGAAATATAGACCTTACAGAATTAGATTGACATACAGTAGAGAAGCACGTTGGGATCCCATCTTCTTGAAGTGTTAAATGCAAGGTTGCTTTCCAGCGTGTTTTTAATGTGACTTTTGAACAGGGAAGGTAACTCGGGAGCTCAGAAAGGTGTTAGTGGTTTTTTGTTTTGCATTGGTTTTTTTGTTTTGTTTTGTATAGCAGAGAGTTTTCTGCCTTCTTTTTTTATTAGTTGAATATTTTAGTGTGCACGTACAAACTAGTAAAAATTGTAGCTCTGTTGTTGTAAAATGGACTATATAATATTGATTCCTTCAAAAAAAGCTGGCTGATTGATTCTTATTCTTCTCTCCACGCTAG
Seq C2 exon
GCTCGGGAATTACAAGCCAGAGTACTTAAACGGGCTCAGACAGAGCAGCCAGATGCAGTTCCTGCACAGAAACAGTTAGCAGCTGAAATTTGTGCTGAGATTGCAAAGCATTGTACAGTTCAGCGAAACTATGAAAAAGCAATTAAATTTTACAAAGAAGCACTTGTTCACTGTGAAACTGATAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010956:ENSGALT00000017831:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.011
Domain overlap (PFAM):
C1:
PF134241=TPR_12=FE(44.9=100)
A:
NA
C2:
PF134241=TPR_12=PD(7.7=9.5),PF145591=TPR_19=PU(35.8=38.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGAACTGTCTTCTCTGATGGA
R:
CTTTTTATCAGTTTCACAGTGAACAA
Band lengths:
294-1812
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]