DreINT0169084 @ danRer10
Intron Retention
Gene
ENSDARG00000012368 | ttc21b
Description
tetratricopeptide repeat domain 21B [Source:ZFIN;Acc:ZDB-GENE-031010-34]
Coordinates
chr9:50129262-50131878:-
Coord C1 exon
chr9:50131772-50131878
Coord A exon
chr9:50129451-50131771
Coord C2 exon
chr9:50129262-50129450
Length
2321 bp
Sequences
Splice sites
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
3' ss Seq
TTTGTTGTTTTTGTTTGCAGGCC
3' ss Score
10.5
Exon sequences
Seq C1 exon
TGATTGAGCTGCCTCTGCTTACTGAAGATTGTCGGTATCTTGTTCTTCTTGCCAAAGTCCAGAGCAAAGTTATTAAAAATGATGAAGCATTGCTGTCCTTGCAGAGA
Seq A exon
GTGAGTTAAATGACTTTTTGTGTGTAGTAGTGTTGTTATTGTTAATTAAACTGAATTGTCTGTCAATTACATCTAGCTAAAATAAAATGTAAATAATAATACATAGAAATATAAAGAAATTAAAGTTATTTAATTAAGAGTAAGAATATATATGTATAGTTGAAGTCAGAATTATTAGCCCCTCTTTGATTATTAATATTTTTTTTCTTTTTTCAATATTTCCCAAACGATGTGTAACAGATCAAGGGAATTTTCACAGTATGTCTGATAATATTTTTTTCTTCTGGAGAAAGTCTTATTTGTTTTATTTTGACTTGAATAAAAGCAGTTTAATTTTTTTTTTTACTATTTTAAGGACAAAATAATTAGCCCCTTTAAGCTACTTTTTCCCCCCTAAATTCTACAGAACAAACCATCATTATACAATAACTTGCCTAATTTACCTAACCTGCCAAGGTAATCTAATTACCCTAGTTAAGCCTTTAAATAAAAGCCTTTGAGCTGTATAGAAATGTCTTGAAAAATATCTAGTAAAATATTATTTTTGGGGGTAATAATTCTGACTTCAACTATGTATGTATATATGTATACTGTATATATACAGTGTTTCCTCTAGGATTTTTTTTCCAGCTGTGGTGACAGGTCTTTTACACAAATCTGCCAGCTACCTATGGCGGTATTTCAATGACAAATGGAGAAATGTTGTGTGTGCAGTATAGCGATATTAAGTCAAGATCACATTTATGTATTACAAGCATGCAAATCTCTGCTTGTGTGCCGATTTCCTCTGTCCGTGTAAACAATTTCTTTCACGCCCTCAAATAAATGCTGCTCAAGCGCAGATCTTCTTGTGTGCTCTCAGATAAACGCTGCTGTAATGCCATTTAGTGAGTTTATGTAACGAGTGTGTCCAGGCACGTGCACACATAGGGCTCAACCTGTGCAGTGCACATGCCCTTTTTAGTCTTGGAAAGAAAGTGCCCTTCCAAAATGATCAAAAGTGCCCCCGCGACGCGACACACCCTCCGTCCCGCCCTTCAGTAGGCGCACGACAACACTGATCTTGAGTACGCGGCCTCAACCCCCCCTCCCCCGCTTTACAGTACGCGCGCAACAACACAGCTGATTAGTACGCTTCAGTACGCGCCCCCCTTCAAAAAATGTATCTTGCACATGCCCTTTGGACCGTCTCTACACGGGCCTGAGTATGTCATAAAGCTGATAAATGTCAAAAGCACATCACAAAAGTACTAACGTTGAAATAAAAATTGCAAGAAAAAGTTAAATATGAAGGTAAAATCTTTATTTTAAAAATTATTAAATAAGTACCTTGTAAGTATTCACAAAAAGCATAAATAATTAAACCTGAGTTAATTAATAGTCCAAATTACATTCAGAACTCTCTTCTGAAGTTAAACATTACCTTCTTTCACATAATTTCCCAACATAATAAATAATTAAATAAAAGCTGATGTGAATTATACCCAGAACAGTTGTGTGGTGTGGATGTGAACAGTTGTGTACAATGGTTGTAAAAGTGTTCCTCCTTTTGAAATTGTAAAAAAACTTCATTCAATTCATTCATCTTGTCCCAACTCAAATAATTAAGTTAACAAAACTAGTTTAAGTGGATTGAACATTAAGCAAAAAGAAAGTTTCCCCAGAAATTCTCCAGAATTGTGGTGTTTTAGGAAACAGAAAGCTGCTCCTACTCCTATATATATATGCATACATACATACATACATACATACATACATATATGACGTCCTGTTTGTGGCACATTAGTTTATGTGAGGGGGCAAACTTTTCAAGATGGGTAGTGACCATGGTGGCCATTTTGAATTCGGCCATCTTGGATCCAACTTTAGTTTTTTCAATAGGAAGAGGGTCATTTGACACATCAAACTTATTGGGAATTTCACATGAGGGATGTAACAAAACATTTAGATCTGGTGAAAATCAGATTCTCCCTAAAAAAAAACAAAGAATTTGGAAACATTTAATAGATCGTTTTAAAAACATCAATTCTAGAGGAAATAGTTAAATTAAAGATGATTAGACTAATTTAGATTAAAAAAAGTATTTCTTTCTTTCTTTAATTATTGTATTTATCTATTATTATTTTACTTTCTTATGCATTGTTTTTATATTGTCTCTTTTATGATGAATTGTTGTGTAAAAATGTTCGTTGGATCAAAAAAGTCAGTGTGTTTTAATATTTAAAAAATAAAGAAAGTATAAAATTTTTTTTTGTTTTAGCTTATTTGAAAAAAATAGTTTGAACAAGCAGCAAAAATCTTTTTGTTGTTTTTGTTTGCAG
Seq C2 exon
GCCAGAGACGTGCAGGCGAAGGTGCTGAAGCGTGTTCAGCTGGAGCAGCCCGACTCGGTGCCTGCACAGAAACAGCTCGCCGCAGAGATCTGTGCTGAAATCGCCAAACACTGCAGCAGCCAGAGAGGCTACGAAAGAGCCGTCAAGTTCTACAAAGAGGCGCTTGTGTACTGTGAAAACGACAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012368:ENSDART00000044270:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134241=TPR_12=FE(45.5=100)
A:
NA
C2:
PF134241=TPR_12=PD(9.1=10.9),PF131761=TPR_7=PU(91.7=51.6),PF134321=TPR_16=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]