BtaINT0154331 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016512 | TTC21B
Description
Bos taurus tetratricopeptide repeat domain 21B (TTC21B), mRNA. [Source:RefSeq mRNA;Acc:NM_001102108]
Coordinates
chr2:30458256-30458965:+
Coord C1 exon
chr2:30458256-30458448
Coord A exon
chr2:30458449-30458867
Coord C2 exon
chr2:30458868-30458965
Length
419 bp
Sequences
Splice sites
5' ss Seq
TTGGTATGG
5' ss Score
5.53
3' ss Seq
TTCGTCTGTTTCCTTTTTAGGAT
3' ss Score
13.53
Exon sequences
Seq C1 exon
TGTGGACGTAGTCAACTCATTCTTCAGAAAACCCAAACATTACTAGAAAGAGCTTTTAATTTAAATCCTCAGCTGTCAGAATTTGCTACAGAGCTTGGATACCAAATGATTTTACACGGGAAAGTGAAAGAGGCCTTGAAGTGGTACAAGACCGCCATGACACTAGACGAGACCAGTGTCCCTGCTCTCGTTG
Seq A exon
GTATGGCAGCTGCATCTATGAGCGTTCCTCATACAGAGGCAAACGACGATTGGTTTTAACACCTGCCTTTAAAGAAGAAAAGACATATCTTGTAGTTTTCTAAAATTAAACAGTTCTCTACTATCTACAGCAGAAAAAAATCATGTACCATTAAAAATAGAATTTTTGTTTCTTAGAAACTATCTGCAGGTAATAGATTTTTATGAGATAATTCCCATAAATTAAGAATTCCTTAGTAACTGATTTTATGTGGGTACAAAGCTACCCATTTCCTTTTACTCTTTTTCTTTTTTTAATCTAAAACTTTGTATTATGGCCGAAAAAAAAAAAAACCTTGTTTAATATCGTTTGTGTTAACTTGAGATGTACTTGCCTGAAATGATGTGGATTTTTCCCATTTTCGTCTGTTTCCTTTTTAG
Seq C2 exon
GATTTATCCAGTGTCAATTAATAGAAGGGCAACTACAGGATGCAGATCAGCATCTAGAATTCCTTAGTGAAGTTCAGCAGTCTTTTGGAAAATCGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016512:ENSBTAT00000005682:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF145591=TPR_19=PU(39.7=44.6)
A:
NA
C2:
PF145591=TPR_19=FE(43.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTAGTCAACTCATTCTTCAGA
R:
CGCCGATTTTCCAAAAGACTGC
Band lengths:
286-705
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]