RnoINT0082224 @ rn6
Intron Retention
Gene
ENSRNOG00000054733 | LOC103690137
Description
tetratricopeptide repeat protein 21B-like [Source:RGD Symbol;Acc:9071802]
Coordinates
chr3:50656125-50657467:+
Coord C1 exon
chr3:50656125-50656984
Coord A exon
chr3:50656985-50657369
Coord C2 exon
chr3:50657370-50657467
Length
385 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGA
5' ss Score
8.72
3' ss Seq
TTGTTTCTCTTTGGTTTCAGGAC
3' ss Score
11.44
Exon sequences
Seq C1 exon
CCTTGTTGGGTACCAAGGTAAGGAGAAGCTCTTGGACCTGCCAATGTAAACTATGACATTTAGGAGGAAGAAAAAATATAAAAGTATGAACTAAGATAATTTTTTCTTTATTTGTGTTACTGCCTGACACAAGTTCATTTTTTAGAATGATTATAGACTTGTTTGTTTATCAAAATATTCCGAAGAATGTGTTGCTCTTAAAGTTGGTATGTTCAATAGTTATTTAACCTCATTGGCATCAGCAAGCTTTAGGTGAAGTTTTTTCCAAAAAAGTATAAGCCACATATTTTTAAATTCTTTCCTGATTGGTGCAGGTTGTCTTTAAGGGGAAAGGGATTTTTACTTAAATATGTACACTTATTTTGAAACCTTAAAATACGGATTTTTCAATCTAATTTGAAAGAACAATCATGTTTTTGTACAAGAGAACTATATGTCTAGATGGTCATGTCATAAAACAGTGCTTGTTGAAATATCCAGCTTGTAGGGTGGGTCCTACACTCGTTCTGGATGTGGTACCTAGATGATAGAAAGCCTTTCCTTTTAAATAATCATATTCCCCCTTCCATCCTGTGCACTCCAAGCTGTATATGTAAGAGTAGAGAAAAATAGCTCTGGTATTCTGAGACTGGACTTCTTGTCTAAATGGTTTTTCTTTTCTTTTCAGTGTGGACGTAATCAACTCATTCTTCAAAAAGTTCAAAGTTTCCTAGAAAAAGCATTTAGTTTAACCCCCCAGCAAGCAGAAATTGCTACAGAGCTTGGCTACCAAATGATTCTCCAAGGCAAAGTCAAGGAGGCCTGGAAGTGGTACAGGACCGCCATGACACTGAACGAAAGCAACATCTCTGCCGTCACCG
Seq A exon
GTGAGATGACAGCTTCCTCCACAGGAACCGGCTTCAGGGACCTGCCCACGGAAGCAGAGAGTATAGAGTTAATTTTTTAGAAAAATTAAACTCTTTCTACTCTGCAATAAAATGGGAAATCGTGCATCTTTAAAAAGATCAGTTGACTTCTCAAATACTCTCTTGAAAGACTGGATTTTATCTGGTTGCTTCTGTCAAGTTATGGATTGTGCAGTAAAAGATTTTACGTAGCTCCTGGCTACCTATTTTCTTCCCCACCCCTCCCACTGCTGTTTTCTTTCAGTTTTTTCCAGCCTAGAGCAGTATTATTGTGATGGAGAAAGATGTTTCCTTAACGTAGGTTTGTGGGTTGGGATAGGCTCTGATTGTTTCTCTTTGGTTTCAG
Seq C2 exon
GACTTATCCGATGTCAGTTAATAGAAGGACAATTGCAAGATGCAGACCAGCAGTTGGAGTTCTTCAGTGAATTCCAGCAGTCAATGGGAAGATCTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000054733:ENSRNOT00000077132:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGTGCACTCCAAGCTGTA
R:
CCAACTGCTGGTCTGCATCTT
Band lengths:
349-734
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]