DreINT0169101 @ danRer10
Intron Retention
Gene
ENSDARG00000012368 | ttc21b
Description
tetratricopeptide repeat domain 21B [Source:ZFIN;Acc:ZDB-GENE-031010-34]
Coordinates
chr9:50148095-50150150:-
Coord C1 exon
chr9:50149958-50150150
Coord A exon
chr9:50148193-50149957
Coord C2 exon
chr9:50148095-50148192
Length
1765 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
3' ss Seq
GTATTGTTGTGTTTGTACAGGTA
3' ss Score
8.62
Exon sequences
Seq C1 exon
TGTGGAAGAGCTGAGAAGATTCTCCAGCACACTCACCGGATGGTGGAGCGGGCATTTGCACAGGCTTCCAGTGACTCTGAACTAGCCACAGAGATGGGCTACCAGCTGATCCTCATGGGCAGAGTCAAAGAGGCCATGAAGTGGTACAAAACAGCAATGACTCTTGATGAAAGCAGCGTCTCCGCTTTGATAG
Seq A exon
GTAAGAGACGTTTTTAAAGCCATAAGGAAGAGAGTGCTTAAGTCGAAATTTATGATTATTTTTTTTTCTTATTTCAGATGAAAATTTTTATTTTAGTTTTTAATTTTAACTTAACCCTAACTTACCTAGTTAAGCATTTAAATATCACTTTAAGCTGTATAAAAGTGTCTTATACATAATATAAATATTATGTGCTGTCATCATGGCAAAGATAAAAGAAATCAGTTATTAGAAATATAATGTTTTGAAATTAGTTTAAAAATCTTCTTTGCGTTATACAGAAATTGTGTGAAAATATACAGGAGGGGCTAATTATTCAGGAGGGCTAATAATTCTGATTTCAACTGTATATTGAAGATTGAGCAGTTGGAATGTTGCTGTCGTTCATCATTGATTTGTTTTAGCATTTTATAAAAGCAATGTAATGATAAATACTGCAATACCTAATGTGTGGTCTTTTATTTTAAACACCCTATAAATACATTGTTTAAGCCATTTGGAAAGCATATATTTAATACATGAAACTCACTGGCAGACAGCTGCTTTCCAGCACTCACATTTCTGCAGTTTAAATGCACTTTAATTTCAAAATGTCTTTATGATGTGAAATTAGTTTAAGCATCGTCAGTCTTGTCTTGAAGGGCTAAACTGACTAGAAGCAACATCATCACTAGGTCTATTTGATGATGTCAGTAATTACTAAACAGCAGTAATTCTAAAAAAAAAAAAAAAGAAAAAAAAAGAAAATTCTGGAAACAGAAATAAATGCTTTGAGCACTCTATACACAAGAAATATTTATTTTTATTGCTTTTACTGACTTTGAATTTGAAGATATCATTAGTTAAATGAAAAACAAATAAAGAAATATTGTAAAATTATTTAAAGGTTTATTTATTCATTTTCTTTTCGGCATAGTCCCTTTATTATTCTGAGGTTGCCACAGCGGTATGAAGCGCCAACTTATCCAGCATATGTTTTATGCAGTGGATGCCCTTCCAGCTGCAACCCATCACTGGGAAACATCCATACACTCTCATTCACTCACATACATTATGGCCAATTTAGCTTACCCAATTCACCTATAGTGCATGTCTTTGGACTTGTGGGGGAAACCGGAGCACCCGGAGGAAACCCACGCAAACACAGAGAGAACATGCAAACTCCACAAAGAAATACCAACTGACCCAGATAGGACTTGAACCAGCGACCTTCTTGCTGTGAGACAATCGTGCTACCCATTGCCCTAATTAAAAGTTGATATAAAATAATTTTCATCAATTCAAAGAAAATTGAAATAAAATAAAATGAAATAGAATTAGTGGATAAAAAAATATATACACATTATATATATATATAGCACAAAACAAATAATTTAATTAAGTAGATTTTACAAAAACAAAACAAATTAACATTCATTCATTATGAAACTCATTCTTTGAATTCATTCAAACTCCACACAGAAATGCCAACTGGCCCAGCCAGTACTCGAACCAGCCACCTTTTTGCTGTGAGGCGACAGTTCTAACCACTGAGCCACCGTAGTGCCCCCAATAAATTTGCATAGTTAATATTAATAGTATATAGATAATTGTAGTGCAGTACTTAATAGTAATATAATAATTACTAATAGAACATAGACAGTAATATAGACAATAATAGTATATAAATGCTGAAATTACACTGTTTAGGATGCCTGACTAAAATTAGCATGATTATTAAACCACATTTTGATTTTTTTATTTGTGTATTGTTGTGTTTGTACAG
Seq C2 exon
GTATCATCAGGTGTCAGCTAATAGAAGGACACATAGAAGATGCAGAACAGCAACTGGAGTTTCTCACAGAGATCCAGCAGTCCATTGGCAAATCAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012368:ENSDART00000044270:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF145591=TPR_19=PU(38.2=44.6)
A:
NA
C2:
PF145591=TPR_19=FE(42.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGAAGAGCTGAGAAGATTCT
R:
ATTTGCCAATGGACTGCTGGA
Band lengths:
286-2051
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]