HsaINT0174199 @ hg19
Intron Retention
Gene
ENSG00000123607 | TTC21B
Description
tetratricopeptide repeat domain 21B [Source:HGNC Symbol;Acc:25660]
Coordinates
chr2:166786160-166786874:-
Coord C1 exon
chr2:166786682-166786874
Coord A exon
chr2:166786258-166786681
Coord C2 exon
chr2:166786160-166786257
Length
424 bp
Sequences
Splice sites
5' ss Seq
TTGGTATGA
5' ss Score
5.24
3' ss Seq
TTTCTGCTGTTTGATTTTAGGAT
3' ss Score
11.39
Exon sequences
Seq C1 exon
TGTGGACGTAGTCAACTTATTCTTCAAAAAATTCAAACGTTACTTGAGAGAGCTTTTAGTTTAAACCCTCAGCAATCAGAATTTGCTACAGAACTTGGATACCAAATGATTTTACAAGGAAGAGTTAAAGAGGCACTGAAGTGGTATAAGACCGCCATGACACTTGATGAGACTAGTGTGTCTGCCCTAGTTG
Seq A exon
GTATGACAACTGTTTTCATAAATATTTATAATATAGATACAAGTAGCAATTGCTTTTAACTTGCCATTAGAGAAGAACACATGGATTTTGTGGTTTTCTAAACTTAAATTGTTCTCTACTGCCCACACTCGAAAAAGTCATGTCTTTAAAATTTTTAATTCACAAATAATATCTTGAGAGAATAGATTTTTATAACGTGGTTCCTATAAATTATGAATTCTTCAGTAAATGATTTTATAAGGTCCAAGGCTACCCATTTTATTTTCTTTCACTCTTCATTTTCTTTCTTTCTGTTGTTTTTAATCTAAAACGTTAAGTATTGTGATGGGGGAAAGGGTGTTTTATTAATGTTGTTATGTTAGCTTGAAGAGTGCATCCCTGAATTGGTGTGGACTTTGACTGTCTTTCTGCTGTTTGATTTTAG
Seq C2 exon
GATTTATCCAATGTCAGTTGATAGAAGGGCAATTACAGGATGCAGATCAGCAGCTAGAATTTTTAAATGAAATCCAGCAATCCATTGGAAAATCTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123607-TTC21B:NM_024753:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF145591=TPR_19=PU(50.9=44.6)
A:
NA
C2:
PF145591=TPR_19=PD(47.4=81.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTCAAACGTTACTTGAGAGAGCT
R:
CGCAGATTTTCCAATGGATTGCT
Band lengths:
262-686
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)