GgaINT0048240 @ galGal3
Intron Retention
Gene
ENSGALG00000010956 | TTC21B
Description
NA
Coordinates
chr7:21138413-21140853:+
Coord C1 exon
chr7:21138413-21138605
Coord A exon
chr7:21138606-21140755
Coord C2 exon
chr7:21140756-21140853
Length
2150 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
3' ss Seq
AATCTTGTAATGTGTTACAGGAA
3' ss Score
7.92
Exon sequences
Seq C1 exon
TGTGGCCGGAACCAACTCATCCTTCAACATACACAAACATTAGTTGAAAGAGCATTTAATTTGGATTCTGACAATGCAGAATTTGCTACGGAGCTTGGCTACCAAATGATTTTACAAGGGAAAGTGAAAGAAGCTTTAAAATGGTATCAGACTGCTATGACACTTGATGAGACAAGCGTTTCTGCCCTAACTG
Seq A exon
GTAAGGTCTTAAACTTGCTGTTTATTTTATTTTCTTGCTTTTAAGATGGGTGATGCTTTGTTGATCAAATTTTCCTACTACTGCTACTGTGAATAACAAGAACTATTACTGAATAGCATATGGTTCTTGTTTTGTGAAATTATTTTGCTAAGTAGTTGTTAGATCTGCAGCATTTGTACATTGTTTATTCTTAAGAAGTTATATCTTCATGTATCCTGATGGCTTCAATTTGTTTTCTTTTGCAGTGCATATTTAATATGATATGTTATCTTCATTTAACACTTCTTTTTTTTTTCAGTACATGAGGCGTTGCCTTGGGTTCCTCTATCTGGAGTTACTTGAGAGGGGGAAAAAGCTTTTAAAATGTCATTAGTATCACTGATAGAGAGAGATAGAGAGACTAACTCTACTAGGGCTGTTTTTCCTTCCAATTTTTGGCTCTGTTGTTCCATGACATTACTGTTTTGTGCAGTGTTATGTTCTTGGCTTTCAGCAGAATAGTGCATACAGCATTTAAAATGCAGACATGAGGTAACTTATTTTTTTTCTTCTGACTTTGACTAGTGTAATGCATATACTGTACTCATTCCTTTTATTTTAATCACGGTGCAAATCTGTATAGCAGATTTGCAGAAGCACTTAACTGCAAAATACGTGGTACCAAAGTGGTGTCGCTCCTTAGAGAGTATTGGATCTTACTGTAAGACAGGGATTAGCAACACTGAGCAGTAGTTATTCATACAGGAGGAGAATGAAAATATTTTAGTTTCCTGTCTTTTTCCCACGTACTGTCTGATTCATGGGGAAGAACGCCCACCAAAACATGAGCTATCCACTGCTAGCCTTGTTAGAATGGTTTTGTGTGGCTGTGCGTGTGTGTTAGTGAAACAAGCACACATGAAGGGAGGGAGCAAATCAATGATTATTGCTTATTTGACCATGGTAAAAGGCTGTTGCTTTATGAAACGCGTTGGTCTGAGTTTCAGCTGCTGTAAATACTGATACAGTTATTTTATTATCCTTGAAAATCATCAATTACCATACTTGTCTGTGGTAACTCAGGTTTACCGTCACACATCAGTGCCTCTGTTTAAACTAGAACCTGATTTTTCAGTTTGATGCATTCTTCTGGCTGGCTGGGCGTGCACAGACCTGGCTAAAGCAAAGTTGTCTTTCTTTACCTCATAATCTCCTTCAGATATTTTTTTGTCTACCGTGGACAGCCCTTCCTTTCTTTCGGTGACTCATATATGCAGATGAAGCATTACATTTCCTCCAGACCTCTCCTTGCCTGGGCTGCAACCAAAACACACACTTCTTTGTTGTTGTTAACATACATCACCACTGAAGTTATATTTTAATCGCAGTTTTCTCTGTCATCTGAATATCTGTTTTTTATTTTACACTCTTGGGAGCAGACATTATCTTTTCAGTATGTTAATAAAGTGCCTGTGTTTGCCAAAGCTAGGGAGCTCTCATGCACTGCAGAAATAATAAATTCAAGGGCAGGTGGTAGAACAAGCTGCCTTCTGTGTCCACAGCGAAGACTGAAGTGCATGCTTTTCAGCCTGATTTAGGCGTGTACAGAACATAATCAGACAATTCTGATAATTACTGCAGATTAAGAATTGGAAGATCTTTGGGAGGGAAAGAGATATCTATTTTTGATAAAGTGAAGATCTCAAGGAAATGAAGAATAAATATGACGTGTGCTTCAGTCTTTGCATTTTTATCTGTAGCACTGCTTTCTACTCTGAAAACTCACAGTATAAAAAAAATCTGTTTTGTGTGTGGTCTGGGGTGTTCTTTTGTTACCTTATCCTGCTTGTTGGATTTGAAAGCGAAGATTTATGGTGCTTTGACTCGTGTTAGTCTAGAACCAACTGAAGATTTACTGAGCTCAGCTTTGTAGCATTAGGATTTGGATATTTTTGCAAAGTGACCTTTTGGCATTGCTTACATTAGTTATGTGTCTTCTATCTCTGGTATTTCTTAGTATGAGAGATCTGCGTTACTGTAGATCTTGGTCTGTTCTTTTTCTTCTCTTATCACCGTTTTATTAAGAGGCTGAAGTGAGAAGACTTCTAGGAAACAGTGCATATATTTGACTTGAAGACGAATCTGAAATAAAATCTTGTAATGTGTTACAG
Seq C2 exon
GAATTATTCGTTGTCAGCTAATACAAGGGCAGCTGGAAGATGCAGAACAGCAGCTGGAGTTTCTTAATGAAATCCAACAGTCCATTGGAAAATCTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010956:ENSGALT00000017831:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF145591=TPR_19=PU(50.0=44.6)
A:
NA
C2:
PF145591=TPR_19=PD(48.3=84.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]