BtaINT0155324 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006395 | TUBGCP2
Description
Bos taurus tubulin, gamma complex associated protein 2 (TUBGCP2), mRNA. [Source:RefSeq mRNA;Acc:NM_001098149]
Coordinates
chr26:25954964-25955410:+
Coord C1 exon
chr26:25954964-25955136
Coord A exon
chr26:25955137-25955281
Coord C2 exon
chr26:25955282-25955410
Length
145 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGC
5' ss Score
9.1
3' ss Seq
ACCTCGTCCTGTGCTCACAGGAA
3' ss Score
9.85
Exon sequences
Seq C1 exon
ATCGACCTGATGCCTCACGACCTCATCACCCAGCTGCTGCGGGTCCTGGCCATTGAGACCAAGCAGGAGAAAGCCATGGTCCACGCCGACCCCACCGAGCTCACACTCAGTGGCCTGGAGGCCTTCTCCTTCGACTATGTGGTCAAGTGGCCCCTGTCTCTGATCATTAACAG
Seq A exon
GTGCGCGTTGGGCTCTCATGCCCGCTCGTGCCCCAGGGGTTACTGGCTGCTGGGCCGTGCTCTGCCCCACGAGCCTCGCGTGGGGCGCCTGGGGCAGCAGCAGCTCCCGAGCGCCCGTTGGAGCCACCTCGTCCTGTGCTCACAG
Seq C2 exon
GAAAGCCCTGACGCGTTACCAGATGCTCTTCAGACACATGTTCTACTGCAAGCACGTGGAGCGGCAGCTGTGCAGCGTCTGGATCAGCAACAAGACGGCCAAGCAGCACTCCCTGCACTCCGCCAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006395:ENSBTAT00000008383:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF041308=Spc97_Spc98=FE(11.0=100)
A:
NA
C2:
PF041308=Spc97_Spc98=FE(8.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGCCTCACGACCTCATCAC
R:
TTGTTGCTGATCCAGACGCTG
Band lengths:
258-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]