DreINT0169788 @ danRer10
Intron Retention
Gene
ENSDARG00000013079 | tubgcp2
Description
tubulin, gamma complex associated protein 2 [Source:ZFIN;Acc:ZDB-GENE-031118-150]
Coordinates
chr12:9164843-9168073:+
Coord C1 exon
chr12:9164843-9165015
Coord A exon
chr12:9165016-9167944
Coord C2 exon
chr12:9167945-9168073
Length
2929 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTT
5' ss Score
7.51
3' ss Seq
CACTCAATACTGTTTTACAGGAA
3' ss Score
7.57
Exon sequences
Seq C1 exon
ATTGACCTGATGCCCCATGATGTAATCACTCAGCTGTTACGTGTCCTCGCTATTGATACCAAACAGGAGAAAGCCATAATTAATGCAGAGCCCACAGAGGTGTCACTTAGCGGTCTAGAGGCTTTCTCTTTCGACTACATCGTCAAGTGGCCACTTTCACTCATAATTAACAG
Seq A exon
GTATTTTTAATTAACAGGTATATTTTTGTGTATGGCTGTAACTATCACCCTGTGCTTCATAAAAAAACATTGTTTTATAATTTACCCAACCTTCATTTGTCTTGTTCCAAACCTGCATTTCATGCAGTTAAGGTCCAATCATATGTACTTCTGTGATGCAAGTTGCAATTTACAGATTTCTGCTGATATTTCACATTTACACTGTGATCAAAACTGTCATTACACATTTATACACTACATTTTACACACTAAGCAAATGAAAATATCAAATGTAATTGTCACATATCTTCAAGTCCAATTAGAAGTAACCCACAAACAGACACTATATGACTTGGAAATGTTGCAGATTATGTACGAAGTCAGAAATGTGGCATTACTAAAAGATGCACATTACTCACTTTACCTTTGGTAACATGTTTTGATGTTTAATGTGTAACATTACATGCTTCGCGATTTAAAAATGTCACAATGTTACAGTTTAAGCATTGGAAGCGTCACACATTATGCACCTCATGATTGGGAAATATTTTCTTCTACACTAAGCAATTAGACGTGTCACAATAAGCACTTCAGGATTGGAAAATGTTACATTACACGTTAAGAATCGGAAGTGTCGCACTACTCACTTCACGGTTGGAAAATGTTGGATCTTACACATTAACCATTGGAAGTGTCACATTACACATTTTATGATTGGGAAATGTTACACGTTAAGAATAGGAAGTGTCACAAATTGTTCACATCACGACTTTAAAATGTTATGTGTTAAATGCTTAAGACGTGTCAAACATTACCCACTTCTCGATTGAAAATGTTATGCATTGCACATTAACTATCGGAAGTGTCACATTCCGCATTTCACGATAGGAAAATTTTATGCGTTGCACATTAACCATCAGAAGTGTCACATTACGCACATCACGATTGGGAAATGTTATGCGTTGCAGATTAACTATCGGAAGTGTCACATTCTGCATTTCATGATTGACAAATGTTATGTGTTGCACAATAACCATTGGAAGTGTCACATTACGCACTTCACAATTGGCAAATGTTATGCGTTGCACATTACCCATTGGAAGTGTCACATTACGCAGTTCATGATTGGAAAATGTAACGCGTTGCACATTAACCATCGGAAGTGTCACATTCCGCATTTCAAGATAGGAAAATTTTATGCGTTGCACATTAACCATCAGAAGTGTCACATTACGCACATCACGATTGGGAAATGTTATGCGTTGCACATTAACCATTGGAAGTGTCACATTACGCAATTCACGATTAGGAAATGTTATGCGTTGCACGCTAACCATCAGAGGTGTCACATTACGCACTTCACGATTGGAAAATGTTATGCACATTAACCATTGGAAGTGTCACATTCCTCATTTCATGTCTGGGAAATGTTATGCGTTGCATACTAACCATCAGAGGTGTCACATTACGCACTTCACGATTGGGAAATGTTATGCGTTGCACATTAACCATCGGAAGTGTCACATAATGCACTTAGCGATTGGGAAATGTTACACGTTAAGATTTGGAAGTGTCACAAATTGTTCACTTCACATCTGGAAAATGTTATGTGTTAAATGCTTTAGTGGTTTCAAACATTACGCACTTCACAACTGAGAAATATTGTTAAACATTAAGCATTGGAAGTGTCAAACATTAAACACTACATGATTGGAAAATGTTATGCGTTGTACAGTAAGAATCGGAAGTGTAACACTACTTCATGATTGGGAAATCATAATAAACCTTAAGCATTTGAAGTGTCAAACATTACACATTTCACAATTAGGAAATATTATGTTATACATTAAGAATCGGAAGTGTAACATGGTTCACCTCACTATTACGAGATCTTAGGGCATACTCACACTGTGTACAGTTGCCTTGAACAGGGCCAAAGCACGCTTGTGCCTCCTCCCGTCTCCCCCGATGACCCGCACTCACATAACATTCGGGCCTAGGCACGCTTACGTCATCGATGCTGCGCTGTTCAGTAAGAAGCGCTCTCGCTCAGCACAGCAGAGATTTCTTGAGTTGTATCGTTTAAGTTGTTTGATATGCGGTGACAATAGTCAAATATTATGTAGAACAGATCCACCATTGCTGACGCTCATAAACAATCATAAAGTCCTTGTGCTGCAGGAATTAGGAAGTTTGCTGAAGGTGCAGCTGTTGTGCAGTGAGGGGTTTGCGTCTTTAATAATCTATGACAGTTTGCATTCATTGAACAGTAAGAATGATTAATAAATCCATATCAAACAGTCCCATAAAAGTTACGTCTCGTTTTCAGTTTCGGGCTCATGCGTGCTTTGCACTCAAACATCAAGCATACCGTACCTGAGCCCAAGTGAACCATGCTCTGGCACACCTCTTCCAACCGAGCCAGGGCCGGCCAAGTGAACCGTGCCTGAGCAAATTCAGAGCACTCATACTTCTCAAACAATCTGGGAAACGGGTCTGGGCACAGTTCGGATAGCATAGTGTAAGTAGGCCCTTACATGTTACACACCAAGCAATCAGAGGTGTCACTCATTACACAGGTCACAATTGGAAAGTGTTTGATTGTTATACTACACTCTTACTACTGTAAGTGATCAGAAATGCCATATCACACATTACATAATCAGAGCAATATTGCAAGTTACACACAGCATGACTGGATATTATGCAGTTTGAAATGTTTCACGTTACACACTACCTGATTGGAAATGTTGTATGTTGCAAATTTCCATGCACAAAATATTTTTCCCCAAGTTCAGGTCGGTCCCATGAATTTTCTGTGCTGACAGGCAGAAACTGCATGGTTGGAAAGTGCATTACATTATAGACTTCATACTGTACATTTTTTTCCACACACAAAAAAAAACAGAACATTTGCCTTTAGAATAAAGCACTCAATACTGTTTTACAG
Seq C2 exon
GAAAGCCCTGACAAGATACCAGATGCTCTTCAGGCACATGTTTTACTGCAAGCACGTAGAAAGGCTGCTCTGTAATGTGTGGATCAGCAATAAAGCAACTAAGCAATATTCACTGCACACTGCGAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013079:ENSDART00000020192:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF041308=Spc97_Spc98=FE(11.0=100)
A:
NA
C2:
PF041308=Spc97_Spc98=FE(8.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]