RnoINT0158279 @ rn6
Intron Retention
Gene
ENSRNOG00000018137 | Tubgcp2
Description
tubulin, gamma complex associated protein 2 [Source:RGD Symbol;Acc:1309597]
Coordinates
chr1:212338245-212338828:-
Coord C1 exon
chr1:212338656-212338828
Coord A exon
chr1:212338374-212338655
Coord C2 exon
chr1:212338245-212338373
Length
282 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TGACATGCCCCTCTTTGCAGGAA
3' ss Score
10.7
Exon sequences
Seq C1 exon
ATTGACCTGATGCCTCACGACCTTATCACTCAGCTTTTGCGGGTTCTGGCCATAGAGACCAAGCAAGAGAAGGCAATGACCCATGCTGACCCCACGGAGCTCACTCTGAGTGGTCTCGAGGCTTTCTCCTTTGACTATATGGTCAAATGGCCCTTGTCACTGATTATTAACAG
Seq A exon
GTGAGGCTTATGTGACCCAGGCCATTTATGGTCAGGCAAGTGCTCACCACTGAGCGCTGACCTTTCAGTTAAGGGTTTTCAGTTGGTATTTAACCTCTAATAACTAGTATTAGAAACTTGGTTGCTTTTCCAGCTCAGTGCAGGGGTGGATGGGAATCATAACTGCCTGCTTGGGCAGCCTCACTGCAGGATGCTAGGCTGTTCTTGCTGTCTGTTGGTGCCAACCTGTAGATAGAAGTACAGGCTGCCTCGTCCAGGTTGCTGACATGCCCCTCTTTGCAG
Seq C2 exon
GAAGGCACTCACCCGCTACCAGATGCTCTTCCGACACATGTTCTACTGCAAGCACGTGGAGCGACAGCTCTGCAGTGTCTGGATCAGCAACAAGACAGCCAAGCAGCATGCGCTGCACTCCGCCAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018137:ENSRNOT00000024573:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF041308=Spc97_Spc98=FE(11.0=100)
A:
NA
C2:
PF041308=Spc97_Spc98=FE(8.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGACCTGATGCCTCACGAC
R:
GCATGCTGCTTGGCTGTCTT
Band lengths:
284-566
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]