MmuINT0168162 @ mm9
Intron Retention
Gene
ENSMUSG00000025474 | Tubgcp2
Description
tubulin, gamma complex associated protein 2 [Source:MGI Symbol;Acc:MGI:1921487]
Coordinates
chr7:147186914-147187497:-
Coord C1 exon
chr7:147187325-147187497
Coord A exon
chr7:147187043-147187324
Coord C2 exon
chr7:147186914-147187042
Length
282 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
GACATGGCCCCTCTTTGCAGGAA
3' ss Score
9.64
Exon sequences
Seq C1 exon
ATTGAACTGATGCCTCACGACCTAATCACTCAGCTTTTGCGGGTTCTGGCCATCGAGACCAAGCAGGAAAAGGCAATGACCCATGCTGACCCCACGGAGCTCACACTGAGTGGTCTGGAGGCCTTCTCCTTTGACTACATGGTCAAATGGCCCCTGTCACTGATTATTAACAG
Seq A exon
GTGAGTCCTATGTGACCCAGGCTCTTTATGCTCAGGCAAGTGCTCACCACTGAGCTGTTCCTGACCTTTCAGATCAGGCTTTTCAGTTGGTATTTAACCTCTGCTCGTATTAAGAAACTTGTTTGCTTTTCCAGCTCAGTGCGGGGTGGATGGGAGTCAGAACTGCCTGCTTGGGCAGCCTCACCCTGTAGGCTGCTGGGTTGTTCTTACTCCCTGTTGGTGCAGCCCAGTCAGCAGCACGGGCTGCCTTGTCCAGGTTGCTGACATGGCCCCTCTTTGCAG
Seq C2 exon
GAAGGCACTCACCCGCTACCAGATGCTCTTCCGACACATGTTCTACTGCAAGCACGTGGAGCGGCAGCTCTGCAGTGTCTGGATCAGCAACAAGACGGCCAAGCAGCATGCACTGCACTCCGCCAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025474-Tubgcp2:NM_133755:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF041308=Spc97_Spc98=FE(11.0=100)
A:
NA
C2:
PF041308=Spc97_Spc98=FE(8.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAACTGATGCCTCACGACC
R:
AGTGCATGCTGCTTGGCC
Band lengths:
286-568
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: