HsaINT0175388 @ hg38
Intron Retention
Gene
ENSG00000130640 | TUBGCP2
Description
tubulin gamma complex associated protein 2 [Source:HGNC Symbol;Acc:HGNC:18599]
Coordinates
chr10:133285085-133285628:-
Coord C1 exon
chr10:133285456-133285628
Coord A exon
chr10:133285214-133285455
Coord C2 exon
chr10:133285085-133285213
Length
242 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGG
5' ss Score
9.13
3' ss Seq
TGCCGCCACGTCTCTTGCAGGAA
3' ss Score
10.36
Exon sequences
Seq C1 exon
ATCGACCTGATGCCCCATGACCTCATCACTCAGCTCTTGCGCGTCCTGGCCATCGAGACCAAGCAGGAGAAGGCGATGGCGCACGCCGACCCCACGGAGCTGGCGCTGAGCGGCCTGGAGGCCTTCTCTTTCGACTACATCGTCAAGTGGCCCCTTTCGCTCATCATCAACAG
Seq A exon
GTGCGGGTCGGCTGCTCGGGCACCTGCCAGATCTTCACTCAGGTTTGGCAGAAGCGAGAACTGTGCCACGCGGTGGCCACCTCGTCCCACAGAGGACCCAAGGCGGCTCTCCCCGGCCTTCAGTGTCCGAGAGATTCACGGGCTGTCCGGGGGCCACGGTGCGGACTGTGGAGTACAGACGCCGTGTCCACGACGCCGCCGGTCACGGAGGCCCACCTGAGGTGCCGCCACGTCTCTTGCAG
Seq C2 exon
GAAAGCCCTCACTCGCTACCAGATGCTCTTCAGGCACATGTTCTACTGCAAGCACGTGGAGCGGCAGCTCTGCAGCGTCTGGATCAGCAACAAAACCGCCAAGCAGCACTCGCTGCACTCCGCCCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130640:ENST00000252936:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF041308=Spc97_Spc98=FE(11.0=100)
A:
NA
C2:
PF041308=Spc97_Spc98=FE(13.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGACCTGATGCCCCATGA
R:
GAGTGCTGCTTGGCGGTTTT
Band lengths:
284-526
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains